UCSCView-class          package:rtracklayer          R Documentation

_C_l_a_s_s "_U_C_S_C_V_i_e_w"

_D_e_s_c_r_i_p_t_i_o_n:

     An object representing a view of a genome in the UCSC browser.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects are created by calling 'browserView(session, ...)' where
     'session' is a 'UCSCSession'.

_S_l_o_t_s:


     '_h_g_s_i_d': Object of class '"numeric"', which identifies this view
          to UCSC.

     '_s_e_s_s_i_o_n': Object of class '"BrowserSession"' to which this view
          belongs.

_E_x_t_e_n_d_s:

     Class '"BrowserView"', directly.

_M_e_t_h_o_d_s:


     '_a_c_t_i_v_e_V_i_e_w(_o_b_j_e_c_t)' Obtains a logical indicating whether this
          view is the active view. 

     '_r_a_n_g_e(_o_b_j_e_c_t)' Obtains the 'RangesList' displayed by this view. 

     '_r_a_n_g_e(_o_b_j_e_c_t) <- _v_a_l_u_e' Sets the 'RangesList' displayed by this
          view. 

     '_t_r_a_c_k_N_a_m_e_s(_o_b_j_e_c_t)' Gets the names of the visible tracks in this
          view. 

     '_t_r_a_c_k_N_a_m_e_s(_o_b_j_e_c_t) <- _v_a_l_u_e' Sets the visible tracks by name. 

     '_v_i_s_i_b_l_e(_o_b_j_e_c_t)' Get a named logical vector indicating whether
          each track is visible.

     '_v_i_s_i_b_l_e(_o_b_j_e_c_t) <- _v_a_l_u_e' Set a logical vector indicating the
          visibility of each track, in the same order as returned by
          'visible(object)'.

     '_u_c_s_c_T_r_a_c_k_M_o_d_e_s(_o_b_j_e_c_t)' Obtains the 'UCSCTrackModes' for this
          view. 

     '_u_c_s_c_T_r_a_c_k_M_o_d_e_s(_o_b_j_e_c_t) <- _v_a_l_u_e' Sets the 'UCSCTrackModes' for
          this view. The 'value' may be either a 'UCSCTrackModes'
          instance or a character vector that will be coerced by a call
          to 'ucscTrackModes'. 


_A_u_t_h_o_r(_s):

     Michael Lawrence

_S_e_e _A_l_s_o:

     'browserView' for creating instances of this class.

