Entry: RangedData-methods
Aliases: RangedData-methods GenomicData score<- score<-,RangedData-method score,RangedData-method chrom chrom,RangedData-method genome genome,RangedData-method genome<- genome<-,RangedData-method strand,RangedData-method
Keywords: classes methods
Description: Data on a Genome
URL: ../../../library/rtracklayer/html/RangedData-methods.html

Entry: RangesList-methods
Aliases: RangesList-methods GenomicRanges chrom,RangesList-method genome,RangesList-method genome<-,RangesList-method
Keywords: classes methods
Description: Ranges on a Genome
URL: ../../../library/rtracklayer/html/RangesList-methods.html

Entry: UCSCData-class
Aliases: UCSCData-class export.bed,UCSCData-method export.gff,UCSCData-method export.ucsc,UCSCData-method initialize,UCSCData-method show,UCSCData-method coerce,RangedData,UCSCData-method
Keywords: classes
Description: Class "UCSCData"
URL: ../../../library/rtracklayer/html/UCSCData-class.html

Entry: UCSCTableQuery-class
Aliases: UCSCTableQuery-class browserSession,UCSCTableQuery-method browserSession<- browserSession<-,UCSCTableQuery,UCSCSession-method trackName trackName,UCSCTableQuery-method trackName<- trackName<-,UCSCTableQuery-method tableName tableName,UCSCTableQuery-method tableName<- tableName<-,UCSCTableQuery-method range,UCSCTableQuery-method range<-,UCSCTableQuery,RangesList-method tableNames tableNames,UCSCTableQuery-method getTable getTable,UCSCTableQuery-method track track,UCSCTableQuery-method ucscTableQuery ucscTableQuery,UCSCSession-method show,UCSCTableQuery-method
Keywords: methods classes
Description: Querying UCSC Tables
URL: ../../../library/rtracklayer/html/UCSCTableQuery-class.html

Entry: activeView-methods
Aliases: activeView activeView<- activeView-methods activeView<--methods activeView,BrowserSession-method activeView,UCSCView-method
Keywords: methods
Description: Accessing the active view
URL: ../../../library/rtracklayer/html/activeView-methods.html

Entry: BasicTrackLine-class
Aliases: BasicTrackLine-class coerce,character,BasicTrackLine-method coerce,BasicTrackLine,character-method
Keywords: classes
Description: Class "BasicTrackLine"
URL: ../../../library/rtracklayer/html/basicTrackLine-class.html

Entry: blocks-methods
Aliases: blocks blocks-methods blocks,RangedData-method
Keywords: methods manip
Description: Get blocks/exons
URL: ../../../library/rtracklayer/html/blocks-methods.html

Entry: browseGenome
Aliases: browseGenome browseGenome,RangedDataORRangedDataList-method browseGenome,missing-method
Keywords: interface
Description: Browse a genome
URL: ../../../library/rtracklayer/html/browseGenome.html

Entry: BrowserSession-class
Aliases: BrowserSession-class show,BrowserSession-method [[,BrowserSession-method [[<-,BrowserSession,ANY,ANY,RangedDataORRangedDataList-method $,BrowserSession-method $<-,BrowserSession,ANY,RangedDataORRangedDataList-method range,BrowserSession-method
Keywords: classes
Description: Class "BrowserSession"
URL: ../../../library/rtracklayer/html/browserSession-class.html

Entry: browserSession-methods
Aliases: browserSession browserSession-methods browserSession,character-method browserSession,BrowserView-method browserSession,missing-method
Keywords: methods
Description: Get a genome browser session
URL: ../../../library/rtracklayer/html/browserSession-methods.html

Entry: BrowserView-class
Aliases: BrowserView-class show,BrowserView-method visible visible,BrowserView-method visible<- visible<-,BrowserView-method
Keywords: classes
Description: Class "BrowserView"
URL: ../../../library/rtracklayer/html/browserView-class.html

Entry: browserView-methods
Aliases: browserView browserView-methods browserView,UCSCSession-method
Keywords: methods
Description: Getting browser views
URL: ../../../library/rtracklayer/html/browserView-methods.html

Entry: browserViews-methods
Aliases: browserViews browserViews-methods browserViews,UCSCSession-method
Keywords: methods
Description: Getting the browser views
URL: ../../../library/rtracklayer/html/browserViews-methods.html

Entry: cpneTrack
Aliases: cpneTrack
Keywords: datasets
Description: CPNE1 SNP track
URL: ../../../library/rtracklayer/html/cpneTrack.html

Entry: export
Aliases: export export,ANY,ANY,character-method export,ANY,missing,character-method export,ANY,character,missing-method export,ANY,character,character-method
Keywords: IO
Description: Export objects to connections
URL: ../../../library/rtracklayer/html/export.html

Entry: export-tracks
Aliases: export.gff export.gff,RangedData-method export.gff1 export.gff2 export.gff3 export.gff1,ANY-method export.gff2,ANY-method export.gff3,ANY-method export.bed export.bed,RangedData-method export.wig export.wig,ANY-method export.ucsc export.ucsc,RangedData-method export.ucsc,RangedDataList-method
Keywords: IO
Description: Export tracks
URL: ../../../library/rtracklayer/html/export.gff.html

Entry: genomeBrowsers
Aliases: genomeBrowsers
Keywords: interface
Description: Get available genome browsers
URL: ../../../library/rtracklayer/html/genomeBrowsers.html

Entry: getSeq-methods
Aliases: getSeq,UCSCSession-method
Keywords: methods
Description: Retrieving a genome sequence
URL: ../../../library/rtracklayer/html/genomeSequence-methods.html

Entry: import
Aliases: import import,ANY,character,ANY-method import,character,missing,ANY-method import,character,character,ANY-method import,missing,ANY,character-method
Keywords: IO
Description: Importing objects
URL: ../../../library/rtracklayer/html/import.html

Entry: import.gff
Aliases: import.gff import.gff,ANY-method import.gff1,ANY-method import.gff2,ANY-method import.gff3,ANY-method import.wig,ANY-method import.gff1 import.gff2 import.gff3 import.wig import.bed import.bed,ANY-method import.ucsc import.ucsc,ANY-method
Keywords: IO
Description: Importing tracks
URL: ../../../library/rtracklayer/html/import.gff.html

Entry: sequence<--methods
Aliases: sequence<- sequence<--methods
Keywords: methods
Description: Load a sequence
URL: ../../../library/rtracklayer/html/laySequence-methods.html

Entry: track<--methods
Aliases: track<- track<--methods track<-,BrowserSession,RangedData-method track<-,BrowserSession,RangedDataList-method track<-,UCSCSession,RangedDataList-method
Keywords: methods
Description: Laying tracks
URL: ../../../library/rtracklayer/html/layTrack-methods.html

Entry: targets
Aliases: targets
Keywords: datasets
Description: microRNA target sites
URL: ../../../library/rtracklayer/html/targets.html

Entry: tracks-methods
Aliases: trackNames trackNames<- trackNames<--methods trackNames<-,UCSCTrackModes-method trackNames<-,UCSCView-method trackNames-methods trackNames,UCSCSession-method trackNames,UCSCTrackModes-method trackNames,UCSCView-method
Keywords: methods
Description: Accessing track names
URL: ../../../library/rtracklayer/html/tracks-methods.html

Entry: UCSCSession-class
Aliases: UCSCSession-class initialize,UCSCSession-method track,UCSCSession-method range<- range<-,UCSCSession,RangesList-method genome,UCSCSession-method genome<-,UCSCSession-method range,UCSCSession-method range,ucscCart-method
Keywords: classes
Description: Class "UCSCSession"
URL: ../../../library/rtracklayer/html/ucscSession-class.html

Entry: TrackLine-class
Aliases: TrackLine-class coerce,character,TrackLine-method coerce,TrackLine,character-method show,TrackLine-method
Keywords: classes
Description: Class "TrackLine"
URL: ../../../library/rtracklayer/html/ucscTrackLine-class.html

Entry: UCSCTrackModes-class
Aliases: UCSCTrackModes-class [,UCSCTrackModes-method [<-,UCSCTrackModes-method
Keywords: classes
Description: Class "UCSCTrackModes"
URL: ../../../library/rtracklayer/html/ucscTrackModes-class.html

Entry: ucscTrackModes-methods
Aliases: ucscTrackModes ucscTrackModes<- ucscTrackModes-methods ucscTrackModes,character-method ucscTrackModes,missing-method ucscTrackModes,UCSCView-method ucscTrackModes<--methods ucscTrackModes<-,UCSCView,UCSCTrackModes-method ucscTrackModes<-,UCSCView,character-method ucscTrackModes,ucscTracks-method ucscTrackModes,UCSCSession-method
Keywords: methods
Description: Accessing UCSC track modes
URL: ../../../library/rtracklayer/html/ucscTrackModes-methods.html

Entry: UCSCView-class
Aliases: UCSCView-class range,UCSCView-method range<-,UCSCView,RangesList-method visible,UCSCView-method visible<-,UCSCView-method
Keywords: classes
Description: Class "UCSCView"
URL: ../../../library/rtracklayer/html/ucscView-class.html

Entry: WigTrackLine-class
Aliases: WigTrackLine-class coerce,character,WigTrackLine-method coerce,WigTrackLine,character-method coerce,WigTrackLine,BasicTrackLine-method coerce,BasicTrackLine,WigTrackLine-method
Keywords: classes
Description: Class "WigTrackLine"
URL: ../../../library/rtracklayer/html/wigTrackLine-class.html
