SBML import {rsbml}R Documentation

Read in an SBML file (start here)

Description

Read an SBML file into R.

Usage

rsbml_read(filename, text, dom = TRUE, strict = FALSE, schema = FALSE)

Arguments

filename the name of the SBML file to parse
text a string of SBML text to parse (instead of file)
dom whether to convert directly to the S4 DOM (TRUE, the default) or leave as the internal SBMLDocument.
strict whether to report warnings in addition to errors or not (FALSE, the default).
schema whether to perform XML schema validation

Value

a SBML object, or a SBMLDocument if dom is FALSE.

Author(s)

Michael Lawrence

Examples

  # Read an SBML file
  file <- system.file("sbml", "GlycolysisLayout.xml", package = "rsbml")
  doc <- rsbml_read(file)
  
  # Read an SBML string
  string <- paste(readLines(file),collapse="\n")
  doc <- rsbml_read(text = string)
[Package rsbml version 2.2.1 Index]