SOSResult-class            package:rsbml            R Documentation

_S_O_S_R_e_s_u_l_t

_D_e_s_c_r_i_p_t_i_o_n:

     A result from simulating an 'SOSExperiment'. Contains the time
     course for each of the model variables: the 'Species' quantities,
     'Compartment' sizes, 'Parameter' values, and 'Reaction' rates.

_S_l_o_t_s:


     '_d_a_t_a': A '"data.frame"' containing the time course data. Each row
          contains the value at a single time point for a single time
          course. Has the following columns:

          '_s_a_m_p_l_e' A factor, the run number, only exists if there were
               multiple runs, see 'SOSDesign'.

          '_t_y_p_e' A factor, the SBML element type for the time course,
               e.g. '"species"'.

          '_i_d' A factor, the 'id' of the SBML element for the time
               course.

          '_t_i_m_e' The numeric time value for the time point.

          '_v_a_l_u_e' The actual numeric value for the time course at that
               time.


     '_s_e_n_s': A '"matrix"' with results from sensitivity analysis, not
          yet supported. 

_E_x_t_e_n_d_s:

     Class '"ExperimentResult"', directly.

_M_e_t_h_o_d_s:


     _a_s._t_s 'signature(x = "SOSResult")': converts this object to a time
          course object of class 'ts'. This allows analysis of the
          results with existing R infrastructure for time course
          analysis.

     _c_o_m_p_a_r_t_m_e_n_t_s 'signature(object = "SOSResult")': returns a subset
          containing only the 'Compartment' size courses.

     _p_a_r_a_m_e_t_e_r_s 'signature(object = "SOSResult")': returns a subset
          containing only the global 'Parameter' value courses.

     _r_e_a_c_t_i_o_n_s 'signature(object = "SOSResult")': returns a subset
          containing only the 'Reaction' rate courses.

     _s_p_e_c_i_e_s 'signature(object = "SOSResult")': returns a subset
          containing only the 'Species' quantity courses. 

_A_u_t_h_o_r(_s):

     Michael Lawrence

_R_e_f_e_r_e_n_c_e_s:

     See <URL: http://www.tbi.univie.ac.at/~raim/odeSolver/> for more
     information on the SBML ODE Solver library.

_S_e_e _A_l_s_o:

     'SOSExperiment' for running a simulation and obtaining an instance
     of this class.

