pancrCaIni               package:graph               R Documentation

_A _g_r_a_p_h _e_n_c_o_d_i_n_g _p_a_r_t_s _o_f _t_h_e _p_a_n_c_r_e_a_t_i_c
_c_a_n_c_e_r _i_n_i_t_i_a_t_i_o_n _p_a_t_h_w_a_y

_D_e_s_c_r_i_p_t_i_o_n:

     A graph encoding parts of the pancreatic cancer initiation pathway

_U_s_a_g_e:

     data(pancrCaIni)

_F_o_r_m_a_t:

     The format is: Formal class 'graphNEL' [package "graph"] with
     edgemode "directed".

_S_o_u_r_c_e:

     The KEGG pancreatic cancer pathway was visually inspected on 17
     Sept 2007 and a subgraph was isolated.  The HUGO names for each
     symbol in the KEGG visualization were obtained and checked for
     existance on hgu95av2.  Some abbreviated terms for processes are
     also included as nodes.

_E_x_a_m_p_l_e_s:

     data(pancrCaIni)
     if (require(Rgraphviz)) {
        nat = rep(FALSE, length(nodes(pancrCaIni)))
        names(nat) = nodes(pancrCaIni)
        plot(pancrCaIni, nodeAttrs=list(fixedsize=nat))
        }

