MAPKsig                package:graph                R Documentation

_A _g_r_a_p_h _e_n_c_o_d_i_n_g _p_a_r_t_s _o_f _t_h_e _M_A_P_K _s_i_g_n_a_l_i_n_g _p_a_t_h_w_a_y

_D_e_s_c_r_i_p_t_i_o_n:

     A graph encoding parts of the MAPK signaling pathway

_U_s_a_g_e:

     data(MAPKsig)

_F_o_r_m_a_t:

     The format is: Formal class 'graphNEL' [package "graph"] with
     edgemode "directed".

_S_o_u_r_c_e:

     The KEGG pancreatic cancer pathway was visually inspected on 17
     Sept 2007, and the subgraph associated with MAPK signaling was
     isolated.  The HUGO names for each symbol in the KEGG
     visualization were obtained and checked for existance on hgu95av2.
      Some abbreviated terms for processes are also included as nodes.

_E_x_a_m_p_l_e_s:

     data(MAPKsig)
     if (require(Rgraphviz)) {
        nat = rep(FALSE, length(nodes(MAPKsig)))
        names(nat) = nodes(MAPKsig)
        plot(MAPKsig, nodeAttrs=list(fixedsize=nat))
        }

