Entry: CD4Ids
Aliases: CD4LLids CD4GOTermsFrame CD4GOTermsList
Keywords: datasets
Description: Entrez identifiers for CD4-TCells example
URL: ../../../library/goProfiles/html/CD4ids.html

Entry: GOTermsList
Aliases: GOTermsList getAncestorsLst getGOLevel
Keywords: manip
Description: Functions to create and manage lists of GO terms associated with a vector of 'Entrez' identifiers
URL: ../../../library/goProfiles/html/GOTermsList.html

Entry: basicProfile
Aliases: basicProfile
Keywords: htest
Description: Builds basic functional profile
URL: ../../../library/goProfiles/html/basicProfile.html

Entry: compSummary
Aliases: compSummary
Keywords: htest
Description: This function returns a brief summary of the comparison between two (expanded) profiles.
URL: ../../../library/goProfiles/html/compSummary.html

Entry: compareGOProfiles
Aliases: compareGOProfiles
Keywords: htest
Description: Comparison of lists of genes through their functional profiles
URL: ../../../library/goProfiles/html/compareGOProfiles.html

Entry: compareGeneLists
Aliases: compareGeneLists
Keywords: htest
Description: Compares two lists of genes by building (expanded) profiles and comparing them
URL: ../../../library/goProfiles/html/compareGeneLists.html

Entry: compareProfilesLists
Aliases: compareProfilesLists
Keywords: htest
Description: Compares two of expanded profiles
URL: ../../../library/goProfiles/html/compareProfilesLists.html

Entry: conversionFunctions
Aliases: as.GOTerms.frame as.GOTerms.list BioCpack2EntrezIDS BioCpack2Profiles BioCprobes2Entrez GOTermsFrame2GOTermsList
Keywords: manip
Description: Functions to transformconvert objects between different types
URL: ../../../library/goProfiles/html/conversionFunctions.html

Entry: drosophila
Aliases: drosophilaIds ostrinIds michaudIds
Keywords: datasets
Description: Entrez identifiers for genes related with an eye mutation in drosophila
URL: ../../../library/goProfiles/html/drosophila.html

Entry: equivSummary
Aliases: equivSummary
Keywords: htest
Description: This function returns a brief summary of the equivalence test between two profiles.
URL: ../../../library/goProfiles/html/equivSummary.html

Entry: equivalentGOProfiles
Aliases: equivalentGOProfiles equivalentGOProfiles.GOProfileHtest equivalentGOProfiles.list equivalentGOProfiles.ExpandedGOProfile equivalentGOProfiles.default
Keywords: htest
Description: Are two lists of genes equivalent in terms of their Gene Ontology profiles?
URL: ../../../library/goProfiles/html/equivalentGOProfiles.html

Entry: expandedLevel
Aliases: expandedLevel expandTerm
Keywords: manip
Description: Function to create expanded levels which can contain GO Terms at different GO levels
URL: ../../../library/goProfiles/html/expandedLevel.html

Entry: expandedProfile
Aliases: expandedProfile
Keywords: htest
Description: Builds expanded profiles
URL: ../../../library/goProfiles/html/expandedProfile.html

Entry: fitGOProfile
Aliases: fitGOProfile
Keywords: htest
Description: Does a "sample" GO profile 'pn', observed in a sample of 'n' genes, fit a "population" or "model" p0?
URL: ../../../library/goProfiles/html/fitGOProfile.html

Entry: goProfiles-package
Aliases: goProfiles-package goProfiles
Keywords: package
Description: Performs Gene Ontology based analysis using Functional Profiles.
URL: ../../../library/goProfiles/html/goProfiles-package.html

Entry: hugoIds
Aliases: hugoIds
Keywords: datasets
Description: Entrez Identifiers obtained from the Human Genome Organization
URL: ../../../library/goProfiles/html/hugoIds.html

Entry: mergeProfilesLists
Aliases: mergeProfilesLists
Keywords: utilities
Description: Combines two lists of profiles into one
URL: ../../../library/goProfiles/html/mergeProfilesLists.html

Entry: omimIds
Aliases: omimIds diseaseIds morbidmapIds dominantIds recessiveIds dominantIdsEBI recessiveIdsEBI dominantIdsNCBI recessiveIdsNCBI
Keywords: datasets
Description: Entrez identifiers for disease-related genes in the OMIM database
URL: ../../../library/goProfiles/html/omimIds.html

Entry: plotProfiles
Aliases: plotProfiles
Keywords: hplot
Description: Plot functional profiles
URL: ../../../library/goProfiles/html/plotProfiles.html

Entry: printProfiles
Aliases: printProfiles
Keywords: hplot
Description: Print functional profiles
URL: ../../../library/goProfiles/html/printProfiles.html

Entry: prostateIds
Aliases: prostateIds welsh01EntrezIDs welsh05EntrezIDs singh01EntrezIDs singh05EntrezIDs
Keywords: datasets
Description: Prostate cancer-related genes
URL: ../../../library/goProfiles/html/prostateIds.html

Entry: sampleProfiles
Aliases: sampleProfiles basicWelsh01 basicSingh01 basicCD4 basicHugo expandedWelsh01 expandedSingh01 commonExpandedWelsh01Singh01 expandedCD4 expandedHugo
Keywords: datasets
Description: Sample Profiles computed on some datasets in the package
URL: ../../../library/goProfiles/html/sampleProfiles.html
