Entry: Genome_intervals-class
Aliases: Genome_intervals-class [,Genome_intervals-method [<-,Genome_intervals,ANY,missing,Genome_intervals-method [[,Genome_intervals-method [[<-,Genome_intervals-method $,Genome_intervals-method $<-,Genome_intervals-method annotation,Genome_intervals-method annotation<-,Genome_intervals,ANY-method inter_base inter_base<- seq_name seq_name<- coerce,Genome_intervals,Intervals_full-method coerce,Genome_intervals,character-method inter_base,Genome_intervals-method inter_base<-,Genome_intervals-method seq_name,Genome_intervals-method seq_name<-,Genome_intervals-method size,Genome_intervals-method show,Genome_intervals-method type<-,Genome_intervals-method
Keywords: classes
Description: Class "Genome\_intervals"
URL: ../../../library/genomeIntervals/html/Genome_intervals-class.html

Entry: Genome_intervals_stranded-class
Aliases: Genome_intervals_stranded-class coerce,Genome_intervals_stranded,character-method strand strand<- strand,Genome_intervals_stranded-method strand<-,Genome_intervals_stranded-method
Keywords: classes
Description: Class "Genome\_intervals\_stranded"
URL: ../../../library/genomeIntervals/html/Genome_intervals_stranded-class.html

Entry: c
Aliases: c c.Genome_intervals c.Genome_intervals_stranded
Keywords: 
Description: Combine genome intervals objects
URL: ../../../library/genomeIntervals/html/c.Genome_intervals.html

Entry: core_annotated
Aliases: core_annotated core_annotated,Genome_intervals-method core_annotated,Genome_intervals_stranded-method
Keywords: 
Description: Genome intervals with minimal annotation
URL: ../../../library/genomeIntervals/html/core_annotated.html

Entry: distance_to_nearest
Aliases: distance_to_nearest distance_to_nearest,Genome_intervals,Genome_intervals-method distance_to_nearest,Genome_intervals_stranded,Genome_intervals_stranded-method
Keywords: 
Description: Distance in bases to the closest interval(s)
URL: ../../../library/genomeIntervals/html/distance_to_nearest-methods.html

Entry: gen_ints
Aliases: gen_ints i j k
Keywords: datasets
Description: Genome Intervals examples
URL: ../../../library/genomeIntervals/html/gen_ints.html

Entry: genomeIntervals-package
Aliases: genomeIntervals-package genomeIntervals
Keywords: package
Description: Operations on genomic intervals
URL: ../../../library/genomeIntervals/html/genomeIntervals-package.html

Entry: getGffAttribute
Aliases: getGffAttribute
Keywords: 
Description: Pull one or more key/value pairs from gffAttributes strings
URL: ../../../library/genomeIntervals/html/getGffAttribute.html

Entry: interval_overlap
Aliases: interval_overlap interval_overlap,Genome_intervals,Genome_intervals-method interval_overlap,Genome_intervals_stranded,Genome_intervals_stranded-method interval_overlap,missing,ANY-method interval_overlap,ANY,missing-method
Keywords: 
Description: Assess overlap from one set of genomic intervals to another
URL: ../../../library/genomeIntervals/html/interval_overlap-methods.html

Entry: interval_union
Aliases: interval_union interval_union,Genome_intervals-method interval_union,Genome_intervals_stranded-method interval_complement interval_complement,Genome_intervals-method interval_complement,Genome_intervals_stranded-method interval_intersection interval_intersection,Genome_intervals-method interval_intersection,Genome_intervals_stranded-method
Keywords: 
Description: Genome interval set operations
URL: ../../../library/genomeIntervals/html/interval_set_operations-methods.html

Entry: parseGffAttributes
Aliases: parseGffAttributes
Keywords: 
Description: Parse out the gffAttributes column of a Genome\_intervals object
URL: ../../../library/genomeIntervals/html/parseGffAttributes.html

Entry: readGff3
Aliases: readGff3
Keywords: 
Description: Make a Genome\_intervals\_stranded object from a GFF file
URL: ../../../library/genomeIntervals/html/readGFF3.html
