Entry: ORF2Entrez
Aliases: ORF2Entrez Entrez2ORF
Keywords: file
Description: Conversion locus tag -> Entrez ID and Entrez ID -> locus tag according to KEGG
URL: ../../../library/gene2pathway/html/ORF2Entrez.html

Entry: classificationModel
Aliases: classificationModel modelKEGG
Keywords: datasets
Description: Hierarchical Classification Model
URL: ../../../library/gene2pathway/html/classificationModel.html

Entry: classificationModelSignalTrans
Aliases: classificationModelSignalTrans modelSignalTrans
Keywords: datasets
Description: Hierarchical Classification Model for Signaling Transduction Pathways and Pathway Components
URL: ../../../library/gene2pathway/html/classificationModelSignalTrans.html

Entry: gene2pathway
Aliases: gene2pathway
Keywords: file
Description: Pathway membership prediction
URL: ../../../library/gene2pathway/html/gene2pathway.html

Entry: gene2pathway.signaltrans
Aliases: gene2pathway.signaltrans
Keywords: file
Description: Pathway membership prediction
URL: ../../../library/gene2pathway/html/gene2pathway.signaltrans.html

Entry: getComponents
Aliases: getComponents get.elements.by.pathway color.pathway.by.elements
Keywords: file
Description: KEGG pathway information
URL: ../../../library/gene2pathway/html/getComponents.html

Entry: internal
Aliases: internal buildTrainingSet buildTrainingSet.signaltrans code_test code_train getInterProDomains getKEGGHierarchy loss predict.gene2pathway struct_predict struct_train svmlearn svmpredict get.element.relations.by.pathway KEGG2Entrez getComponents.internal Entrez2ORF.internal
Keywords: file
Description: internal functions
URL: ../../../library/gene2pathway/html/internal.html

Entry: retrain
Aliases: retrain
Keywords: file
Description: Retrain classification model
URL: ../../../library/gene2pathway/html/retrain.html

Entry: retrain.signaltrans
Aliases: retrain.signaltrans
Keywords: file
Description: Retrain classification model for signaling pathways
URL: ../../../library/gene2pathway/html/retrain.signaltrans.html

Entry: test.overrepresentation
Aliases: test.overrepresentation
Keywords: file
Description: Test statistical overrepresentation of KEGG pathways in a list of genes
URL: ../../../library/gene2pathway/html/test.overrepresentation.html
