DataSet-class           DataSet - class
Simon                   Dataset: Little fragment of a microarray from
                        IFC UNAM
Spot-class              Spot - class
WT.dataset              Microarray from the IFC
Zscore                  Z-scores for identifying differential
                        expression
Zscore.plot             Z-score Data Visualization: R vs I or M vs A
Zscore.points           Z-score Window
a.arise                 A Arise
alter.unique            Remove Duplicates
analysis.window         Analysis.window
annotations             Gene Annotations
back.gui                Return to the last window
bg.correct              Background Correction
classes                 Classes Defined by this Package
create.project          create.project
cys.plot                Data Visualization: log2(Cy3) vs log2(Cy5)
filter.spot             Intensity-based filtering of array elements
genArise                GUI: Graphical User Interface
genArise.init           genArise.init
genMerge                genMerge: Post-Genomic Analysis
get.Zscore              Swap from Files
get.values              Auxiliar function for post-analysis
global.norm             Global Normalization of Spot
graphic.choose          Graphic choose
grid.norm               Normalization by grid of Spot
help                    Help of genArise
i.arise                 I Arise
imageLimma              Image Plot of Microarray
m.arise                 M Arise
ma.plot                 Data Visualization: M vs. A plot
make.swap               Swap analysis
meanUnique              Remove Duplicates
note                    note
old.project             Open previous project
post.analysis           Set-combinatorial analysis
principal               Principal window of genAriseGUI
projects.select         File selector
r.arise                 Get R value
read.dataset            Read Dataset from File
read.spot               Read Spot from File
reset.history           Reset the prj history file
ri.plot                 Data Visualization: R vs I
set.grid.properties     set.grid.properties
set.history.project     Save the history of a project
set.path.project        set.path.project
set.project.properties
                        set.project.properties
single.norm             Swap from Files
spotUnique              Replicate filtering
swap.select             Dye swap files selector
trim                    Trim
write.dataSet           Write dataSet
write.spot              Write Spot
write.zscore            Write Z-score data
