getEnVisionRawData          package:cellHTS          R Documentation

_R_e_a_d _a _p_l_a_t_e _f_i_l_e _o_b_t_a_i_n _f_r_o_m _E_n_V_i_s_i_o_n _P_l_a_t_e _R_e_a_d_e_r

_D_e_s_c_r_i_p_t_i_o_n:

     Import functions to read a plate file obtained from EnVision Plate
     Reader. These functions should be set as the import function of
     'readPlateData' through the argument 'importFun' when reading
     plate result files obtained from EnVision plate reader.

_U_s_a_g_e:

     getEnVisionRawData(f)
     getEnVisionCrosstalkCorrectedData(f)

_A_r_g_u_m_e_n_t_s:

       f: the name of the result plate file to read.

_D_e_t_a_i_l_s:

     These functions should not be called directly. Instead, they
     should be set as the import function of 'readPlateData' through
     the argument 'importFun' when reading plate result files obtained
     from an EnVision plate reader.

_V_a_l_u_e:

     These functions return a list with two components. The first
     component should be a 'data.frame' with the following slots:
     'well' (a character vector with the well identifier in the plate)
     and 'val' (the intensity values measured at each well). The second
     component of this list should be a character vector containing a
     copy of the imported input data file (such as the output of
     'readLines'). It should be suitable to be used as input for
     'writeLines', since it will be used to reproduce the intensity
     files that are linked in the HTML quality reports generated by
     'writeReport'.

_A_u_t_h_o_r(_s):

     Ligia Bras ligia@ebi.ac.uk

_S_e_e _A_l_s_o:

     'readPlateData'

_E_x_a_m_p_l_e_s:

         plateFile <- system.file("EnVisionExample/XXX_1500.csv", package = "cellHTS")
         onePlate <- getEnVisionRawData(plateFile)

        ## to get the cross talk corrected data:
        onePlate2 <- getEnVisionCrosstalkCorrectedData(plateFile)

