AffyProbesMatch-class       package:altcdfenvs       R Documentation

_C_l_a_s_s "_A_f_f_y_P_r_o_b_e_s_M_a_t_c_h"

_D_e_s_c_r_i_p_t_i_o_n:

     Store the results of a call to 'matchAffyProbes'.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form
     'new("AffyProbesMatch", ...)'.

     An object will store the result of matching probe sequences
     against target sequences.

_S_l_o_t_s:


     '_p_m': Object of class '"list"': each element is vector of index
          values

     '_m_m': Object of class '"list"': each element is vector of index
          values

     '_l_a_b_e_l_s': Object of class '"character"'

     '_c_h_i_p__t_y_p_e': Object of class '"character"' and of length 1.

     '_p_r_o_b_e_s': Object of class '"ANY"': the 'probetable' object used to
          perform the matches.


_M_e_t_h_o_d_s:


     _c_o_m_b_i_n_e 'signature(x = "AffyProbesMatch", y = "AffyProbesMatch")':
          combine two instances. This is can be useful when splitting
          the list of target sequences to parallelized the job.

     _s_h_o_w 'signature(x = "AffyProbesMatch")':Show the instance.

     _t_o_H_y_p_e_r_g_r_a_p_h 'signature(object = "AffyProbesMatch")': build an
          'Hypergraph' from the matches.

_E_x_a_m_p_l_e_s:

     showClass("AffyProbesMatch")

