edgeProp                package:ScISI                R Documentation

_A _f_u_n_c_t_i_o_n _t_o _e_s_t_i_m_a_t_e _t_h_e _e_d_g_e _p_r_o_p_o_r_t_i_o_n _o_f _a _y_2_h _i_n_d_u_c_e_d _g_r_a_p_h
_o_n _a _p_r_o_t_e_i_n _c_o_m_p_l_e_x

_D_e_s_c_r_i_p_t_i_o_n:

     This function first creates the Y2H symmetric adjacency matrix on
     a protein complex (as we ignore directionality). Then it
     calculates an estimate for the proportion of edges the complex
     might have with high probability (if the sampling is unbaised and
     without error). In addition to this statistic, it also generates
     an instance of graph, specifically a graphNEL, on the adjcency
     matrix.

_U_s_a_g_e:

     edgeProp(comp, compB2P, sampled)

_A_r_g_u_m_e_n_t_s:

    comp: A character vector of the constitutent members of the protein
          complex of interest

 compB2P: A named list; the names correspond to constituent proteins
          used as baits and the entries are the found hits (prey)

 sampled: A character vector of constituent members used as baits

_V_a_l_u_e:

   eProp: The estimated edge proportion of the complex

y2hGraph: A graphNEL instance of graph

_A_u_t_h_o_r(_s):

     T Chiang

