Entry: bait
Aliases: bait
Keywords: models
Description: A function that obtains the bait protein from the IntAct Interactions
URL: ../../../library/Rintact/html/bait.html

Entry: complexEntry-class
Aliases: complexEntry-class show,complexEntry-method complexes,complexEntry-method interactors,complexEntry-method
Keywords: models
Description: Class "complexEntry"
URL: ../../../library/Rintact/html/complexEntry.html

Entry: complexes
Aliases: complexes
Keywords: models
Description: A function that obtains the complex information from the IntAct Curated Protein Complexes
URL: ../../../library/Rintact/html/complexes.html

Entry: eListHandler
Aliases: eListHandler iListHandler
Keywords: models
Description: xmlEventParse handlers for MIF XML documents from EBI intact
URL: ../../../library/Rintact/html/eListHandler.html

Entry: intactComplex-class
Aliases: intactComplex-class show,intactComplex-method
Keywords: models
Description: Class "intactComplex"
URL: ../../../library/Rintact/html/intactComplex.html

Entry: intactGraph-class
Aliases: intactGraph-class show,intactGraph-method translateIntactID,intactGraph-method translateNodeID, intactGraph-method
Keywords: models
Description: Class "intactGraph"
URL: ../../../library/Rintact/html/intactGraph.html

Entry: intactHyperGraph-class
Aliases: intactHyperGraph-class show,intactHyperGraph-method translateIntactID,intactHyperGraph-method initialize,intactHyperGraph-method
Keywords: models
Description: Class "intactHyperGraph"
URL: ../../../library/Rintact/html/intactHyperGraph.html

Entry: intactInteraction-class
Aliases: intactInteraction-class show,intactInteraction-method bait,intactInteraction-method prey,intactInteraction-method
Keywords: models
Description: Class "intactInteraction"
URL: ../../../library/Rintact/html/intactInteraction.html

Entry: intactXML2Graph
Aliases: intactXML2Graph
Keywords: models
Description: A function that takes a vector of IntAct XML file names and converts them to graph objects.
URL: ../../../library/Rintact/html/intactXML2Graph.html

Entry: interactionEntry-class
Aliases: interactionEntry-class show,interactionEntry-method bait,interactionEntry-method prey,interactionEntry-method interactions,interactionEntry-method interactors,interactionEntry-method organismName,interactionEntry-method taxId,interactionEntry-method releaseDate,interactionEntry-method
Keywords: models
Description: Class "interactionEntry"
URL: ../../../library/Rintact/html/interactionEntry.html

Entry: interactions
Aliases: interactions
Keywords: models
Description: A function that obtains the interaction information from the IntAct repository.
URL: ../../../library/Rintact/html/interactions.html

Entry: interactors
Aliases: interactors
Keywords: models
Description: A function that obtains the interactors either in a binary interaction or a complex co-membership interaction.
URL: ../../../library/Rintact/html/interactors.html

Entry: list2Matrix
Aliases: list2Matrix
Keywords: models
Description: A function that takes a named list representation of a bipartite graph and transforms it into a matrix representation.
URL: ../../../library/Rintact/html/list2Matrix.html

Entry: organismName
Aliases: organismName
Keywords: models
Description: A method to obtain all the unique organism names from the PSI-MI 2.5 XML files upon which the data is based
URL: ../../../library/Rintact/html/organismName.html

Entry: prey
Aliases: prey
Keywords: models
Description: A function that obtains the prey protein from the IntAct Interactions
URL: ../../../library/Rintact/html/prey.html

Entry: psi25interaction
Aliases: psi25interaction psi25complex
Keywords: models
Description: parser for PSI-MI 2.5 XML documents from EBI intact
URL: ../../../library/Rintact/html/psi25interaction.html

Entry: releaseDate
Aliases: releaseDate
Keywords: models
Description: A method to return the release date of the PSI-MI 2.5 XML file
URL: ../../../library/Rintact/html/releaseDate.html

Entry: separateXMLDataByExpt
Aliases: separateXMLDataByExpt
Keywords: models
Description: A function that takes a vector of IntAct XML file name locations and converts them to graph objects.
URL: ../../../library/Rintact/html/separateXMLDataByExpt.html

Entry: taxId
Aliases: taxId
Keywords: models
Description: A method to return all the unique taxonomy IDs indexing the unique organisms upon which the data is based
URL: ../../../library/Rintact/html/taxId.html

Entry: translateIntactID
Aliases: translateIntactID
Keywords: models
Description: A function that translates the IntAct accession codes for molecules to other common identifiers.
URL: ../../../library/Rintact/html/translateIntactID.html

Entry: translateNodeID
Aliases: translateNodeID translateNodeID,intactGraph-method
Keywords: models
Description: A function that translates the IntAct accession IDs in an intactGraph to other common identifiers.
URL: ../../../library/Rintact/html/translateNodeID.html
