80857d043e3b55271cb91476386cd4c3 *CITATION
6ca1b963bda27a72855dfbd73fd4256c *CONTENTS
7176d60a5819abd8e5da3b222e6c226b *DESCRIPTION
86b5f945f975e98b86b61007d5bdbe64 *INDEX
1ff6f1ca5fa2f79054bc6deca64435ab *Meta/Rd.rds
d72a68422d0070b4883cdafcf4ff630a *Meta/hsearch.rds
264320cf98f16948f7ddeae3913dfa40 *Meta/nsInfo.rds
8031647ffa75c4d9302ebd5f5f0b233a *Meta/package.rds
84b71c11a169c9146753fb6ec5a80299 *Meta/vignette.rds
22bd09d55ec68a7c53ede184760b7700 *NAMESPACE
79980797234bd7179296c97bc6042a0c *R-ex/Rex.zip
f07d3015c4220dea7a7be8c741d2985b *R/Ringo
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55164cce0f24dca579a91ae507e0ae10 *R/Ringo.rdx
089e29bd75b0820e1f9801c950320f65 *agilentData/H3K4Me3_Tc1Liver_sol1_mmChr17_part.txt
5415524a104b5816a944f4971595d5ec *agilentData/arrayDescriptionAMEXP1029_part.txt
5a2434a37ee75088c3af5efcccc5240d *agilentData/mm9chr17.RData
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743afdc0a04007fdf60eb7dd4dfabdfb *chtml/Ringo.chm
cffa86669919427a06344ffd09015702 *doc/Makefile
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2cd0754c635e51243773b32d50e33bec *doc/Ringo.Rnw
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3f7ebd178b21eaf7d160d607a2e42ef4 *exData/MOD_20742_PMT1_pair.txt
8e164612155b94980a9cb3b9b7a148cb *exData/README.txt
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643ecee7477324452cbf1040dc5489a6 *exData/exampleX.rda
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4bb3efa4b569917acddee6e3d9d5db33 *exData/reportersInexactMatchesHg18.rda
d020c2bea3ee4cc5de50e947df20e391 *exData/spottypes.txt
36ba12ff81aff3ec701ad75728958336 *help/AnIndex
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53399ed1edf0f58c850606c2ef074520 *html/00Index.html
d12f80610b20366b86e31ca80d27377e *html/Ringo-internal.html
626162d13b93ba918086f9641ba206a5 *html/arrayImage.html
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41b25ebc14306b4526c78589b807dafb *html/autocorr.html
31c490743cf5565217376f97f1481aea *html/cherByThreshold.html
eba29d7cf4f4ce16af874e92ddf7c207 *html/cherClass.html
5ded2ae6b57cbd456a8905be0855e186 *html/chipAlongChrom.html
021fd40544c468260b10426bb2110b17 *html/computeRunningMedians.html
2fa10613560f3cce026b60046e06b826 *html/compute_gc.html
6a81ba17fbf467dc1518c63ff4a6388b *html/compute_sliding_t.html
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7f24d5e525ca6b788339c27dc06decfd *html/exportCherList.html
3d6e38a83dccc2aa9625641e3ca7d0a3 *html/extractProbeAnno.html
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1de5287d780dc78c675305a9f6d5efdf *html/findChersOnSmoothed.html
c4786f80ed295384ccd0c8e20a346d57 *html/ftr2xys.html
d2e14942fc63d9c9872ac91d2283692b *html/getFeats.html
98f7fb81c2ee72ab45e54dc418460a67 *html/newCER.html
683ba9aac605084ca9f888325b2bddb7 *html/nimblegenNorm.html
4289dfe219977b4878dc397a794a335f *html/nonzero.html
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7f871eac75397916453d3e41a17fb3a1 *html/plot_cher.html
4f4576924844751ce7d705dbb312230e *html/posToProbeAnnoEnvironment.html
3713e2151476233e6e60b007aaeee724 *html/preprocess.html
74f727f58f6828746437c2d7bc82ef57 *html/probeAnnoClass.html
35cc49dbb65f5aa2dbcd106dd7e0ef48 *html/readNimblegen.html
3c2378fc01222a8d96322e837be288f9 *html/regionoverlap.html
ed302e3bd3549ee9526c2ac377d37185 *html/relateCERs.html
0d1e5f6150d295bfc0c0b0d28f00fb34 *html/sliding_meansd.html
14c0864ef83419d76268b92062832ec0 *html/sliding_quantile.html
105253610f181dda5b7a6b2fd8bb9d2d *html/twoGaussiansNull.html
0f4321f19abc545ef708daa3f0612c8f *html/upperBoundNull.html
30353d65fe00829f9ebfd6eaf6c8966b *html/validProbeAnno.html
667e2e598f31a225dfb2e2d0c1d4c4c1 *latex/Rhelp.zip
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e98d5a7bd7db1d80d1f28bef15d902b8 *man/Ringo.Rd.gz
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26ace4b02da8e5d607f0566ccadc4e6a *scripts/condenseExonerateOutput.pl
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abc83ca087b05944e99b736a18ec9cc0 *scripts/extractProbeSequenceFasta.pl
651d61b0dda52b6e924b69196870505d *scripts/graphChers2Transcripts.R
ed1c3d0e9bff0018ccf916c22a828c28 *scripts/makeProbeAnno.R
f69c0dd79ddeb4513eb72316c1a4b791 *scripts/mapReportersWithBiostrings.R
a97db632c7fe0facd9d1db343eeebc17 *scripts/retrieveGenomicFeatureAnnotation.R
