| writeData_DB {PAnnBuilder} | R Documentation |
These functions store data tables in the "*.sqlite" file in SQLite-based annotation package.
createEmptyDPkg(pkgName, pkgPath,folders = c("man", "R", "data"), force = TRUE)
writeMeta_DB(db, repList)
writeData_DB(type, srcUrls, db, organism="")
writeSPData_DB(srcUrls, db, organism)
writeIPIData_DB(srcUrls, db, organism)
writeREFSEQData_DB(srcUrls, db, organism)
writeSYSBODYFLUIDData_DB(srcUrls, db)
writeGOAData_DB(srcUrls, db)
writeHomoloGeneData_DB(srcUrls, db)
writeInParanoidData_DB(srcUrls, db)
writeGENEINTData_DB(srcUrls, db)
writeINTACTData_DB(srcUrls, db)
writeMPPIData_DB(srcUrls, db)
write3DIDData_DB(srcUrls, db)
writeDOMINEData_DB(srcUrls, db)
writePeptideAtlasData_DB(srcUrls, db)
writeSYSPTMData_DB(srcUrls, db)
writeSCOPData_DB(srcUrls, db)
writeBACELLOData_DB(srcUrls, db)
writeDBSUBLOCData_DB(srcUrls, db)
writeName_DB(type, srcUrls, db)
writeGOName_DB(srcUrls, db)
writeKEGGName_DB(srcUrls, db)
writePFAMName_DB(srcUrls, db)
writeINTERPROName_DB(srcUrls, db)
writeTAXName_DB(srcUrls, db)
pkgName |
the name of the data package to be built. (e.g. "hsaSP") |
pkgPath |
a character string for the full path of an existing directory where the built backage will be stored. |
folders |
a string vector for the file folder of establish R package. |
force |
a boolean to indicate whether the existed homonymic folder will be removed. |
db |
a object that extends DBIConnection. |
repList |
a named list which will replace the symbols in template file. |
type |
character string, giving the name of concerned database. |
srcUrls |
a character string, giving the url of the source file. |
organism |
a character string for the name of the organism of concern. (eg: "Homo sapiens") |
These functions download and parse data from diverse databases. The result files are stored as tables in the "*.sqlite" file.
writeMeta_DB writes information from "repList" into a table
called "metadata".
writeData_DB download and parse source file, and write the result
files into tables.
Hong Li