LBEplot                 package:LBE                 R Documentation

_G_r_a_p_h_i_c_a_l _d_i_s_p_l_a_y _o_f _L_B_E _o_b_j_e_c_t_s.

_D_e_s_c_r_i_p_t_i_o_n:

     Graphical display of LBE objects.

_U_s_a_g_e:

     LBEplot(LBEobj, rng = c(0, 0.1), plot.type = c("multiple", "main"), legend = TRUE)

_A_r_g_u_m_e_n_t_s:

  LBEobj: LBE object. 

     rng: Range of q-values to consider.  

plot.type: If plot.type == "main", The estimated q-values versus the
          p-values are plotted together with the histogram of the
          p-values.    If plot.type == "multiple" (default value),
          several graphics are displayed.

  legend: Logical value for displaying the legend on the plot (when
          plot.type == "main").

_D_e_t_a_i_l_s:

     If plot.type == "multiple", the following graphics are displayed:
     1. The histogram of the p-values.  2. The estimated q-values
     versus the p-values.  3. The number of significant tests versus
     each qvalue cutoff.  4. The number of expected false positives
     versus the number of significant tests.

_N_o_t_e:

     The function LBEplot is analogous to the function qplot from the
     package 'qvalue'.

_A_u_t_h_o_r(_s):

     Cyril Dalmasso

_S_e_e _A_l_s_o:

     'LBE', 'LBEsummary', 'LBEwrite', 'LBEa'

_E_x_a_m_p_l_e_s:

     ## start
     data(hedenfalk.pval)
     res=LBE(hedenfalk.pval,plot.type="none")
     LBEplot(res)
     LBEplot(res,plot.type="main")
     LBEplot(res,plot.type="main",legend=FALSE)
     ## end

