compKc-class             package:KCsmart             R Documentation

_K_C _s_m_a_r_t _c_o_m_p_a_r_a_t_i_v_e

_D_e_s_c_r_i_p_t_i_o_n:

     A matrix containing the results from a call to
     compareSpmCollection

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can not be created by the user directly but rather through
     compareSpmCollection.

_S_l_o_t_s:


     '_s_p_m_C_o_l_l_e_c_t_i_o_n': The original spmCollection used to compare the
          samples

     '_m_e_t_h_o_d': The method used to create the null distribution

     '_s_i_g_g_e_n_e_s_R_e_s_u_l_t': In case of the siggenes method being used, a
          siggenes object containing the fdr-cutoff table

     '_s_n_r_R_e_s_u_l_t': In case of the signal-noise/permutation based method
          being used, the signal-to-noise data and a matrix with the
          (class based) permutations


_M_e_t_h_o_d_s:


     _i_n_i_t_i_a_l_i_z_e 'signature(.Object = "compKc")': Internal use only 

     _p_l_o_t 'signature(x = "compKc")': ... 

     _s_h_o_w 'signature(object = "compKc")': ... 

_E_x_a_m_p_l_e_s:

     showClass("compKc")

