AnnotatedList-class     Annotated Lists
FilterRules-class       Collection of Filter Rules
IRanges-class           IRanges and NormalIRanges objects
IRanges-constructor     The IRanges constructor and supporting
                        functions
IRanges-setops          Set operations on IRanges objects
IRanges-utils           IRanges utility functions
IRangesList-class       List of IRanges
IntervalTree-class      Interval Search Trees
ListLike-class          ListLike objects
LogicalList             Lists of Atomic Vectors in Natural and Rle Form
MaskCollection-class    MaskCollection objects
RangedData-class        Data on ranges
RangedData-utils        RangedData utility functions
RangedDataList-class    Lists of RangedData
Ranges-class            Ranges objects
Ranges-comparison       Ranges comparison
RangesList-class        List of Ranges
RangesList-utils        RangesList utility functions
RangesMatching-class    Matchings between Ranges
RangesMatchingList-class
                        List of Matchings between Ranges
Rle-class               Rle objects
RleViews-class          The RleViews class
Sequence-class          Sequence objects
TypedList-class         Typed Lists
Views-class             Views objects
Views-utils             Utility functions and numeric summary of Views
                        of numerics
XDataFrame-class        External Data Frame
XDataFrame-utils        XDataFrame utility functions
XDataFrameList-class    List of XDataFrames
XIntegerViews-class     The XIntegerViews class
XRanges-class           External Ranges
XRleIntegerViews-class
                        The XRleIntegerViews class
coverage                Coverage across a set of ranges
disjoin                 Making Ranges disjoint
nearest                 Nearest neighbor finding
rdapply                 Applying over spaces
read.Mask               Read a mask from a file
reverse                 Reverse ranges
score                   Alignments between sequences
