Package: IRanges
Title: Infrastructure for manipulating intervals on sequences
Description: The IRanges class and its extensions are low-level
        containers for storing sets of integer ranges. A typical use of
        these containers in biology is for representing a set of
        chromosome regions. More specific extensions of the IRanges
        class will typically allow the storage of additional
        information attached to each chromosome region as well as a
        hierarchical relationship between these regions.
Version: 1.2.3
Author: H. Pages, P. Aboyoun and M. Lawrence
Maintainer: Biocore Team c/o BioC user list
        <bioconductor@stat.math.ethz.ch>
biocViews: Infrastructure, Genetics
Depends: R (>= 2.8.0), methods, utils, stats
Imports: methods, utils, stats
Suggests: RUnit
License: Artistic-2.0
ExtraLicenses: The following files in the 'src' directory are licensed
        for all use by Jim Kent, in a manner compatible with the
        Artistic 2.0 license: common.c/h, memalloc.c/h, localmem.c/h,
        hash.c/h, errabort.c/h, rbTree.c/h, dlist.c/h, errCatch.h
Collate: validity-utils.R utils.R ListLike-class.R Ranges-class.R
        Ranges-comparison.R IRanges-class.R IRanges-constructor.R
        IRanges-utils.R IRanges-setops.R XRanges-class.R
        IntervalTree-class.R IntervalTree-utils.R SequencePtr-class.R
        RawPtr-class.R IntegerPtr-class.R NumericPtr-class.R
        Sequence-class.R Views-class.R XSequence-class.R XRaw-class.R
        XInteger-class.R XIntegerViews-class.R XIntegerViews-utils.R
        XNumeric-class.R Rle-class.R RleViews-class.R RleViews-utils.R
        XRle-class.R XRleInteger-class.R XRleIntegerViews-class.R
        XRleIntegerViews-utils.R MaskCollection-class.R read.Mask.R
        TypedList-class.R AnnotatedList-class.R AtomicList-class.R
        XDataFrame-class.R XDataFrame-utils.R XDataFrameList-class.R
        RangesList-class.R RangedData-class.R FilterRules-class.R
        RDApplyParams-class.R RangedData-utils.R RangesMatching-class.R
        RangesMatchingList-class.R Alignment-class.R reverse.R
        coverage.R debug.R zzz.R
Packaged: 2009-06-10 21:15:01 UTC; biocbuild
Built: R 2.9.0; i386-pc-mingw32; 2009-06-11 01:59:28 UTC; windows
