GGtools-package         GGtools Package Overview
aafSNP-class            Class "aafSNP" -- container for HTML rendering
                        of SNP metadata
cisSnpTests             perform tests for eQTL cis to specified genes
coerce,cwSnpScreenResult,RangedData-method
                        Transform results of gwSnpTests to browser
                        tracks
gwSnpTests              methods for iterating association tests
                        (expression vs SNP) across genomes or
                        chromosomes
hbTestResults-class     Class "hbTestResults" holds results of tests of
                        association of expression levels with haplotype
                        within haplotype block
hbTests-methods         haplotype-block based tests for structured
                        expression variation
hla2set                 a gene set of 9 genes from human HLA2 locus
hmceuB36.2021           two chromosomes of genotype data and full
                        expression data for CEPH CEU hapmap data
invokePhase-methods     ~~ Methods for Function invokePhase in Package
                        'GGtools' ~~
masterSnps              visualize a multiGwSnpScreenResult
plot,cwSnpScreenResult,missing-method
                        Methods for Function plot in Package 'GGtools'
snpm2mapLD              prepare input to mapLD function for haplotype
                        block identification
snpm2phase              convert information in a snp.matrix to PHASE
                        input format; invokePhase can run a suitably
                        installed version of PHASE
strMultPop              serialization of a table from Stringer's
                        multipopulation eQTL report
topSnps-methods         report on most significant SNP with gwSnpTests
                        results
