DNAcopy               package:DNAcopy               R Documentation

_R_e_s_u_l_t_s _o_f _s_e_g_m_e_n_t_i_n_g _a _C_N_A _d_a_t_a _o_b_j_e_c_t

_D_e_s_c_r_i_p_t_i_o_n:

     The results of segmenting data from copy number array experiments
     from programs such as circular binary segmentation (CBS).

_U_s_a_g_e:

     ## S3 method for class 'DNAcopy':
     print(x, ...)

_A_r_g_u_m_e_n_t_s:

       x: an object of class 'DNAcopy' - output of segment.

     ...: arguments to be passed onto print command called within.

_D_e_t_a_i_l_s:

     An object of class 'DNAcopy'.  There is a 'print' method that
     prints the results in a tabular format.  Each row gives the
     sample, the chromosome, the start and end map locations, the
     number of markers and the mean of each segment.

_V_a_l_u_e:

    data: The original CNA object which was the input for segment

      ID: sample identifier.

   chrom: the chromosome within the sample.

loc.start: the starting map location of the segment

 loc.end: the ending map location of the segment

num.mark: the number of markers in the segment

data.type: the segment mean.

    call: the call that produced the object.

