Entry: AffyInteraction
Aliases: AffyInteraction
Keywords: misc
Description: Analyze interaction effect and produce output
URL: ../../../library/AffyExpress/html/AffyInteraction.html

Entry: AffyQA
Aliases: AffyQA
Keywords: misc
Description: Microarray quality control and assessment
URL: ../../../library/AffyExpress/html/AffyQA.html

Entry: AffyRegress
Aliases: AffyRegress
Keywords: regression
Description: Select differentially expressed genes, and output the result to a html file
URL: ../../../library/AffyExpress/html/AffyRegress.html

Entry: Filter
Aliases: Filter
Keywords: methods
Description: filter an 'ExpressionSet' using different methods
URL: ../../../library/AffyExpress/html/Filter.html

Entry: import.data
Aliases: import.data
Keywords: methods
Description: Importing Affy Cel File
URL: ../../../library/AffyExpress/html/import.data.html

Entry: interaction.result2html
Aliases: interaction.result2html
Keywords: misc
Description: output differentially expressed genes for the interaction model to a HTML file
URL: ../../../library/AffyExpress/html/interaction.result2html.html

Entry: make.contrast
Aliases: make.contrast
Keywords: array
Description: Create a contrast matrix
URL: ../../../library/AffyExpress/html/make.contrast.html

Entry: make.design
Aliases: make.design
Keywords: array
Description: Create a Design Matrix
URL: ../../../library/AffyExpress/html/make.design.html

Entry: post.interaction
Aliases: post.interaction
Keywords: misc
Description: Create a list of tables for the result based on the main effect variable
URL: ../../../library/AffyExpress/html/post.interaction.html

Entry: pre.process
Aliases: pre.process
Keywords: methods
Description: Data Preprocessing
URL: ../../../library/AffyExpress/html/pre.process.html

Entry: regress
Aliases: regress
Keywords: regression
Description: Run regression to fit genewise linear model
URL: ../../../library/AffyExpress/html/regress.html

Entry: result2html
Aliases: result2html
Keywords: misc
Description: output differentially expressed genes to a HTML file
URL: ../../../library/AffyExpress/html/result2html.html

Entry: select.sig.gene
Aliases: select.sig.gene
Keywords: misc
Description: select differentially expressed genes based on p value and/or fold change
URL: ../../../library/AffyExpress/html/select.sig.gene.html

Entry: testData
Aliases: testData
Keywords: misc
Description: AffyBatch instance testData
URL: ../../../library/AffyExpress/html/testData.html
