POSPS              package:yeastGSData              R Documentation

_A _P_l_a_t_i_n_u_m _S_t_a_n_d_a_r_d _D_a_t_a _S_e_t

_D_e_s_c_r_i_p_t_i_o_n:

     While Yu et al. call this a platinum standard data set, it is
     really a gold standard data set for binary physical interactions.

_U_s_a_g_e:

     data(POSPS)

_F_o_r_m_a_t:

     A data frame with 1867 observations on the following 2 variables.

     '_O_R_F_1' a character vector

     '_O_R_F_2' a character vector

_D_e_t_a_i_l_s:

     These data, reported in the paper below, are intended to represent
     well established binary physical interactions between proteins. 
     This contrasts with the _gold standard_ 'MIPSGS' which describes 
     multi-protein complexes.

     Ye et al, describe the construction as follows:  Briefly, the
     data set contains physical interactions from complex  protein
     structures in the Protein Data Bank (Westbrook et al.  2003),
     verified interactions from small-scale experiments (Mewes  et al.
     2000; Xenarios et al. 2002; Bader et al. 2003), and protein  pairs
     from small MIPS catalog complexes (4 or fewer subunits).

_R_e_f_e_r_e_n_c_e_s:

     Annotation Transfer Between Genomes: Protein-Protein Interologs
     and Protein-DNA Regulogs, H. Yu et al, Genome Research, 1107-1118,
     2004.

_E_x_a_m_p_l_e_s:

     data(POSPS)

