MIPSGS              package:yeastGSData              R Documentation

_M_I_P_S _G_o_l_d _S_t_a_n_d_a_r_d _P_r_o_t_e_i_n _I_n_t_e_r_a_c_t_i_o_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     The MIPS gold standard protein complex data set downloaded from
     the  Gerstein Lab web site.

_U_s_a_g_e:

     data(MIPSGS)

_F_o_r_m_a_t:

     A data frame with 8617 observations on the following 5 variables.

     '_O_R_F_1' The ORF for one gene

     '_O_R_F_2' The ORF for the second gene

     '_C_I_D' The MIPS protein complex ID

     '_N_A_M_E' The name of the complex.

     '_N_U_M_B_E_R' The number of proteins in the complex.

_D_e_t_a_i_l_s:

     The data are essentially multiprotein complexes, curated from MIPS
     data, see also the data set in 'Mpact', which is related.

     The data are all pairwise members of each complex.

     Yu et al. state  To compile a reference data set with the lowest 
     false-positive rate, we consider two proteins as interaction part-
      ners if and only if they are in the same complex of the highest 
     level in the catalog. 

_S_o_u_r_c_e:

     <URL: http://interolog.gersteinlab.org>

_R_e_f_e_r_e_n_c_e_s:

     Annotation Transfer Between Genomes:  Protein-Protein Interologs
     and Protein-DNA Regulogs, H. Yu et al, Genome Research, 1107-1118,
     2004.

_E_x_a_m_p_l_e_s:

     data(MIPSGS)

