IlluminaID2nuID             package:lumi             R Documentation

_M_a_t_c_h_i_n_g _I_l_l_u_m_i_n_a _I_D_s _t_o _n_u_I_D _b_a_s_e_d _o_n _I_l_l_u_m_i_n_a _I_D _m_a_p_p_i_n_g _l_i_b_r_a_r_y

_D_e_s_c_r_i_p_t_i_o_n:

     Matching Illumina IDs to nuID based on Illumina ID mapping
     libraries.

_U_s_a_g_e:

     IlluminaID2nuID(IlluminaID, lib.mapping=NULL, species = c("Human", "Mouse", "Rat", "Unknown"), chipVersion = NULL, ...)

_A_r_g_u_m_e_n_t_s:

IlluminaID: a vector of Illumina IDs 

lib.mapping: the ID mapping library. If it is provided, the parameter
          "species" will be ignored. 

 species: the species of the chip designed for. If users do not know
          it, it can be set as "Unknown". 

chipVersion: chipVersion information returned by function 'getChipInfo'            

     ...: other parameters of 'getChipInfo' 

_D_e_t_a_i_l_s:

     When the parameter "chipVersion" is not provided, this function
     basically returned the "idMapping" item returned by function
     'getChipInfo'.

_V_a_l_u_e:

     The mapping information from Illumina ID to nuID. It will be a
     matrix with each column corresponding to one matched manifest file
     when parameter "returnAllMatches" is TRUE. In this case, the
     columns are sorted from the best match to worst. If IlluminaID is
     NULL and chipVersion is provided, it will return all mapping
     information of the chip.

_A_u_t_h_o_r(_s):

     Pan Du

_S_e_e _A_l_s_o:

     'getChipInfo', 'nuID2IlluminaID'

