aafIntensity-class          package:annaffy          R Documentation

_C_l_a_s_s _a_a_f_I_n_t_e_n_s_i_t_y, _a _c_l_a_s_s _f_o_r _g_e_n_e _e_x_p_r_e_s_s_i_o_n _v_a_l_u_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     A class for displaying gene expression values with a green
     background of differing intensities.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects are generally created by the 'aafTableInt' constructor. 
     Objects can also be created manually by calls of the form
     'new("aafIntensity", intensity)'.

_S_l_o_t_s:


     '._D_a_t_a': Object of class 'numeric'

_E_x_t_e_n_d_s:

     Class 'numeric', from data part.

_M_e_t_h_o_d_s:


     _g_e_t_T_D (aafIntensity): Returns an HTML table cell with background
          varrying from white to green depending on intensity. Scaling
          is controlled by two options, 'minIntensity' (fully white)
          and 'maxIntensity' (fully green), usually set by writeHTML.


     See generic implementations of 'getText', 'getURL', 'getHTML', and
     'getCSS'.

_A_u_t_h_o_r(_s):

     Colin A. Smith, annaffy@colinsmith.org

_S_e_e _A_l_s_o:

     aafTableInt

