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| butsInTBox | A function that is the main interface for SAGElyzer |
| calNormFact | Functions to merge SAGE libraries based on unique SAGE tags |
| chunkKNN | Function to filter out the k nearest neighbors for a given tag |
| closeConn | Functions for database connection and manipulation |
| con4Unix | Functions for database connection and manipulation |
| con4Win | Functions for database connection and manipulation |
| doTag2UG | Annotating SAGE tags using data from public databases |
| doUG2Tag | Annotating SAGE tags using data from public databases |
| env2File | Annotating SAGE tags using data from public databases |
| executeQuery | Functions for database connection and manipulation |
| findNeighborTags | Function to filter out the k nearest neighbors for a given tag |
| findNG4Tag | Supporting functions |
| GEOSAGEWidget | Widgets that provide the interface |
| getBinding | Supporting functions |
| getColNames | Function to filter out the k nearest neighbors for a given tag |
| getColSQL | Functions to merge SAGE libraries based on unique SAGE tags |
| getColumnNames | Functions that provide an interface to allow users to query a SAGE library database table |
| getDBArgs | Supporting functions |
| getDMProc | A function that is the main interface for SAGElyzer |
| getFileNames | Automatically downloads SAGE libraries from NCBI |
| getGEOSAGE | Automatically downloads SAGE libraries from NCBI |
| getKNN | Function to filter out the k nearest neighbors for a given tag |
| getKNNProc | A function that is the main interface for SAGElyzer |
| getLibCounts | Supporting functions |
| getLibInfo | Functions to merge SAGE libraries based on unique SAGE tags |
| getLibNNum | Functions to merge SAGE libraries based on unique SAGE tags |
| getMapFileName | Annotating SAGE tags using data from public databases |
| getNormFactor | Functions that get normalization factors for SAGE libraries |
| getSAGEKNN | Supporting functions |
| getSAGESQL | Function to filter out the k nearest neighbors for a given tag |
| getSampleId | Automatically downloads SAGE libraries from NCBI |
| getSLyzerArgs | Supporting functions |
| getTableNames | Functions that provide an interface to allow users to query a SAGE library database table |
| getTag | Supporting functions |
| getTargetRow | Function that retrieves data from selected SAGE libraries for a given SAGE tag |
| getTasks | A function that is the main interface for SAGElyzer |
| getTaskTips | A function that is the main interface for SAGElyzer |
| getTotalRNum | Function to filter out the k nearest neighbors for a given tag |
| getUniqTags | Functions to merge SAGE libraries based on unique SAGE tags |
| getUnixDBArgs | Supporting functions |
| getWinDBArgs | Supporting functions |
| KNNArgsWidget | A function that is the main interface for SAGElyzer |
| linkTag2UG | Supporting functions |
| makeConnection | Functions for database connection and manipulation |
| mapFile2Tag | Functions to merge SAGE libraries based on unique SAGE tags |
| mapLib2File | Supporting functions |
| mapSAGE2UG | Supporting functions |
| mapSAGEWidget | Widgets that provide the interface |
| mergeSAGE | Functions to merge SAGE libraries based on unique SAGE tags |
| mergeSAGEWidget | Widgets that provide the interface |
| modSLyzerArgs | Supporting functions |
| noChunkKNN | Function to filter out the k nearest neighbors for a given tag |
| parseSAGE | Automatically downloads SAGE libraries from NCBI |
| procSAGE | Supporting functions |
| query4Unix | Functions for database connection and manipulation |
| queryInfoDB | Functions that get normalization factors for SAGE libraries |
| querySAGE | Functions that provide an interface to allow users to query a SAGE library database table |
| remapTagNUG | Supporting functions |
| runSLyzer | Supporting functions |
| SAGE4Unix | Widgets that provide the interface |
| SAGEFromGEO | Supporting functions |
| SAGELyzer | Function to filter out the k nearest neighbors for a given tag |
| SAGEMapper | Annotating SAGE tags using data from public databases |
| SAGEToolTips | A list that maps SAGE task or procedure names to tips |
| SAGEWidget | A function that is the main interface for SAGElyzer |
| setKNNArgs | Supporting functions |
| setSLyzerArgs | Supporting functions |
| showDBError | Supporting functions |
| tableExists | Functions for database connection and manipulation |
| writeSAGE2DB | Functions to merge SAGE libraries based on unique SAGE tags |
| writeSAGE4Unix | Functions to merge SAGE libraries based on unique SAGE tags |
| writeSAGE4Win | Functions to merge SAGE libraries based on unique SAGE tags |
| writeSAGECounts | Functions to merge SAGE libraries based on unique SAGE tags |
| writeSAGEKNN | Supporting functions |
| writeSLyzerArgs | Supporting functions |