findNG4Tag             package:SAGElyzer             R Documentation

_S_u_p_p_o_r_t_i_n_g _f_u_n_c_t_i_o_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     These are all supporting functions that may of no use out side of
     thecontext

_U_s_a_g_e:

     getDBArgs()
     getUnixDBArgs(binding = "pg")
     getBinding(binding = c("pg"))
     getWinDBArgs()
     getTag()
     setKNNArgs()
     getSLyzerArgs(argName = "SAGELyzerArgs")
     writeSLyzerArgs(args, argName = "SAGELyzerArgs")
     modSLyzerArgs(argName, value)
     setSLyzerArgs()
     runSLyzer()
     writeSAGEKNN(knn, targetSAGE)
     getSAGEKNN()
     getLibCounts()
     mapLib2File()
     linkTag2UG()
     remapTagNUG(mappings)
     SAGEFromGEO()
     procSAGE()
     mapSAGE2UG()
     showDBError()
     findNG4Tag()

_A_r_g_u_m_e_n_t_s:

 binding: a character string that can be "pg" at this time for
          PostgreSQL

 argName: A character string for the name of a argument stored in an
          environment that can be access for stored information

    args: Contents that will be written to the environment that can be
          accessed later

   value: Same as args above

     knn: Results form running knn

targetSAGE: A character string for a tag sequence that is compared to
          using knn

mappings: A data from that contains mappings between SAGE tags and
          UniGene ids

_D_e_t_a_i_l_s:

     These functions should only be used with the main functions. Users
     do not need to call them out side of the main functions.

_V_a_l_u_e:

     The functions returns various values

_A_u_t_h_o_r(_s):

     J. Zhang

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.ncbi.nlm.nih.gov/geo/query/>

_S_e_e _A_l_s_o:

     'mergeSAGE'

_E_x_a_m_p_l_e_s:

       #No examples provided

