GetLMObj                Function to get a simple lm object for a
                        regression on the relevant model.
LMGene                  LMGene main function
genediff                Raw p-value calculation function
glog                    Generalized log transformation function
jggrad2                 Generating Jacobian-corrected data
jglog                   Glog
lnorm                   Lowess normalization function
lnormeS                 Function to apply lowessnorm to a transformed
                        expression set. Returns the normalized
                        expression set.
mlm2lm                  Linear Model converting function
msa                     Relative mean square calculation function
msecalc                 MSE calculation function
msecalcmult             MSE calculation function
neweS                   Coercing to an ExpressionSet code
norm                    Additive normalization function
psmeans                 Function to take means of probesets.
pvadjust                P-value adjusting function
rowaov                  Gene by gene ANOVA function
rowlist                 Gene name listing function
sample.eS               Sample array data for LMGene
sample.ind              Sample probeset index vector
sample.mat              Sample array data for LMGene package
tranest                 Glog transformation parameter estimation
                        function
tranest2                Glog transformation parameter estimation
                        function 2
tranestmult             Glog transformation parameter estimation
                        function for multiple parameters
transeS                 Function to apply the glog transform to an
                        expression set. Returns the transformed
                        expression set (not normalized).
vlist                   Sample experimental data for LMGene package
