Package: GeneSelector
Version: 1.2.0
Date: 2008-1-31
Title: GeneSelector
Author: Martin Slawski <martin.slawski@campus.lmu.de>, Anne-Laure
        Boulesteix <boulesteix@slcmsr.net>.
Maintainer: Martin Slawski <martin.slawski@campus.lmu.de>
Depends: R (>= 2.5.1), methods, stats, Biobase
Suggests: multtest, siggenes, samr, limma, sma
Description: The term 'GeneSelector' refers to a filter selecting those
        genes which are consistently identified as differentially
        expressed using various statistical procedures. 'Selected'
        genes are those present at the top of the list in various
        featured ranking methods (currently 15). In addition, the
        stability of the findings can be taken in account in the final
        ranking by examining perturbed versions of the original data
        set, e.g. by leaving samples, swapping class labels, generating
        bootstrap replicates or adding noise.
Collate: classes.r GenerateFoldMatrix.r GenerateBootMatrix.r
        GetRepeatRanking.r GetStabilityLm.r GetStabilityOverlap.r
        GetStabilityPCA.r GetStabilityGLM.r AggregateBayes.r
        AggregatePCA.r AggregatePenalty.r AggregateSimple.r
        GeneSelector.r HeatmapMethods.r PCAMethods.r RankingBaldiLong.r
        RankingBstat.r RankingEbam.r RankingFC.r RankingFoxDimmic.r
        RankingGap.r RankingLimma.r RankingPermutation.r RankingSam.r
        RankingShrinkageT.r RankingSoftthresholdT.r RankingTstat.r
        RankingWelchT.r RankingWilcEbam.r RankingWilcoxon.r
        RecoveryScore.r GetAlpha.r AdjustPvalues.r internals.r
License: GPL (version 2 or later)
biocViews: Statistics, DifferentialExpression
Packaged: Wed Oct 22 04:16:23 2008; biocbuild
Built: R 2.8.0; ; 2008-10-22 09:56:57; windows
