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| chrnum | Class "genesym" and other casting classes |
| chrnum,character-method | Class "genesym" and other casting classes |
| chrnum,numeric-method | Class "genesym" and other casting classes |
| chrnum-class | Class "genesym" and other casting classes |
| cnumOrMissing | Class "genesym" and other casting classes |
| cnumOrMissing-class | Class "genesym" and other casting classes |
| combine,smlSet,smlSet-method | Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
| cwSnpScreenResult-class | Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
| exprs,smlSet-method | Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
| filteredGwSnpScreenResult-class | Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
| filteredMultiGwSnpScreenResult-class | Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
| genesym | Class "genesym" and other casting classes |
| genesym,character-method | Class "genesym" and other casting classes |
| genesym-class | Class "genesym" and other casting classes |
| getAlleles | Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
| getAlleles,smlSet,rsid-method | Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
| getSnpLocs | SNP location accessor |
| getSnpLocs,smlSet,chrnum-method | SNP location accessor |
| getSnpLocs,smlSet,missing-method | SNP location accessor |
| gwSnpScreenResult-class | Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
| hsSnpLocs | SNP location accessor |
| multiGwSnpScreenResult-class | Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
| plot,cwSnpScreenResult,ANY-method | Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
| plot,gwSnpScreenResult,ANY-method | Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
| plot,multiGwSnpScreenResult,ANY-method | Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
| plot_EvG | formal method for visualizing expression distributions vs genotype |
| plot_EvG,genesym,rsid,smlSet-method | formal method for visualizing expression distributions vs genotype |
| plot_EvG,probeId,rsid,smlSet-method | formal method for visualizing expression distributions vs genotype |
| plot_EvG-methods | formal method for visualizing expression distributions vs genotype |
| plot_EvG2 | formal method for visualizing expression distributions vs genotype |
| plot_EvG2,genesym,rsid,rsid,smlSet-method | formal method for visualizing expression distributions vs genotype |
| plot_EvG2,probeId,rsid,rsid,smlSet-method | formal method for visualizing expression distributions vs genotype |
| probeId | Class "genesym" and other casting classes |
| probeId,character-method | Class "genesym" and other casting classes |
| probeId-class | Class "genesym" and other casting classes |
| rsid | Class "genesym" and other casting classes |
| rsid,character-method | Class "genesym" and other casting classes |
| rsid,numeric-method | Class "genesym" and other casting classes |
| rsid-class | Class "genesym" and other casting classes |
| show,chrnum-method | Class "genesym" and other casting classes |
| show,cwSnpScreenResult-method | Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
| show,filteredGwSnpScreenResult-method | Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
| show,filteredMultiGwSnpScreenResult-method | Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
| show,gwSnpScreenResult-method | Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
| show,multiGwSnpScreenResult-method | Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
| show,rsid-method | Class "genesym" and other casting classes |
| show,smlSet-method | Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
| show,snpLocs-method | SNP location accessor |
| smlEnv | Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
| smlEnv,smlSet-method | Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
| smList | Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
| smList,smlSet-method | Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
| smlSet-class | Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
| snp.rhs.tests154 | Score tests with SNP genotypes as independent variable - taken from snpMatrix 1.5.4 while 1.5.5 version of this function is diminished in speed |
| snpdepth | Class "genesym" and other casting classes |
| snpdepth-class | Class "genesym" and other casting classes |
| snpLocs-class | SNP location accessor |
| snpLocs.Hs | SNP location accessor |
| snpLocs.Hs,chrnum,missing-method | SNP location accessor |
| snpLocs.Hs,chrnum,rsid-method | SNP location accessor |
| snpLocs.Hs,chrnum.missing-method | SNP location accessor |
| snpLocs.Hs,chrnum.rsid-method | SNP location accessor |
| snpLocs.Hs,missing,rsid-method | SNP location accessor |
| snpLocs.Hs,rsid,ANY-method | SNP location accessor |
| snpLocs.Hs,rsid-method | SNP location accessor |
| snpLocs.Hs,sid,ANY-method | SNP location accessor |
| snpNames | Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
| snpNames,smlSet,chrnum-method | Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
| snpNames,smlSet,missing-method | Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
| snpsNear | obtain list of rs numbers for snps near a gene |
| [,cwSnpScreenResult,ANY,ANY,ANY-method | Class "gwSnpScreenResult" - containers for GGtools gwSnpScreen method outputs and allied objects |
| [,smlSet,ANY,ANY,ANY-method | Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |
| [,snp.matrix,ANY,rsid,ANY-method | Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes |