gahgu95cINTERPRO          package:gahgu95c          R Documentation

_M_a_p _b_e_t_w_e_e_n _c_u_s_t_o_m _p_r_o_b_e_s_e_t _I_d_e_n_t_i_f_i_e_r_s _a_n_d _I_n_t_e_r_p_r_o _d_o_m_a_i_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     gahgu95cINTERPRO is an R environment that provides mappings
     between custom probeset identifiers and Interpro domains of
     corresponding protein.

_D_e_t_a_i_l_s:

     Each identifier is mapped to a named vector containing Interpro
     information about domains names. An 'NA' is reported if there is
     no Interpro information for a given gene.

     Each element name of named vector contains Interpro ID for
     corresponding domain.

     Mappings were based on data provided by:

     GeneCards database - www.genecards.org

     Package built Tue Feb 26 00:16:28 2008

_R_e_f_e_r_e_n_c_e_s:

     <URL: www.genecards.org>

_E_x_a_m_p_l_e_s:

         # Convert the environment to a list
         xx <- as.list(gahgu95cINTERPRO)
         if(length(xx) > 0){
             # The Interpro domains for the first two elements of XX
             xx[1:2]
             # Get the first one
             xx[[1]]
         }

