agARACYC                package:ag.db                R Documentation

_M_a_p_p_i_n_g_s _b_e_t_w_e_e_n _p_r_o_b_e _i_d_e_n_t_i_f_i_e_r_s _a_n_d _K_E_G_G _p_a_t_h_w_a_y _i_d_e_n_t_i_f_i_e_r_s

_D_e_s_c_r_i_p_t_i_o_n:

     AraCyc <URL: http://www.arabidopsis.org/tools/aracyc/> maintains
     pathway data for Arabidopsis thaliana. agARACYC maps probe
     identifiers to the common names of the pathways in which the genes
     represented by the probe identifiers are involved. Information is
     obtained from AraCyc.

_D_e_t_a_i_l_s:

     Annotation based on data provided by: Tair (
     ftp://ftp.arabidopsis.org/Pathways/aracyc_dump_20070703 ) on
     2007-Oct04

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.genome.ad.jp/kegg/>

_E_x_a_m_p_l_e_s:

       x <- agARACYC
       # Get the probe identifiers that are mapped to pathways
       mapped_probes <- mappedkeys(x)
       # Convert to a list
       xx <- as.list(x[mapped_probes])
       if(length(xx) > 0) {
         # Get the pathways for the first five probes
         xx[1:5]
         # For the first probe
         xx[[1]]
       }

