PFAMPDB2AC              package:PFAM.db              R Documentation

_M_a_p_p_i_n_g_s _f_r_o_m _a _P_D_B _I_D _t_o _a _P_F_A_M _A_c_c_e_s_s_i_o_n _n_u_m_b_e_r

_D_e_s_c_r_i_p_t_i_o_n:

     This is an R object that always contains mappings from a PDB ID to
     a PFAM accession (AC)

_D_e_t_a_i_l_s:

     The PFAM accession number has been attached to the PDB IDs in this
     object.

     More Details: PDB (<URL: http://www.rcsb.org/pdb/index.html>), the
     single worldwide repository for the processing and distribution of
     3-D biological macromolecular structure data.  Reference: H.M.
     Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H.
     Weissig, I.N. Shindyalov, P.E. Bourne:  The Protein Data Bank.  
     Nucleic Acids Research  ,  28  pp. 235-242 (2000)

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.sanger.ac.uk/Software/Pfam/> and <URL:
     ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt>

_E_x_a_m_p_l_e_s:

             #To map from PDB to PFAM IDs:
             x <- PFAMPDB2AC
             # Get the PDB identifiers that are mapped to a PFAM ID
             mapped_keys <- mappedkeys(x)
             # Convert to a list
             xx <- as.list(x[mapped_keys])
             if(length(xx) > 0) {
               # Get the PDB ID for the first five CAZYs
               xx[1:5]
               # Get the first one
               xx[[1]]
             }

