GOSYNONYM                 package:GO                 R Documentation

_A_n_n_o_t_a_t_i_o_n _o_f _G_O _S_y_n_o_n_y_m_s _t_o _G_O _T_e_r_m_s

_D_e_s_c_r_i_p_t_i_o_n:

     This data set gives mappings between GO synonyms and their
     respective terms.

_D_e_t_a_i_l_s:

     Each GO synonym is mapped to a 'GOTerms' object that has 6 slots:

_G_O_I_D GO Identifier

_T_e_r_m The term for that GO id

_S_y_n_o_n_y_m Synonymous terms

_S_e_c_o_n_d_a_r_y Secondary terms that have been merged into this term

_D_e_f_i_n_i_t_i_o_n Further definition of the GO term

_O_n_t_o_l_o_g_y One of MF - molecular function, BP - biological process, or CC
     - cellular component

     Synonyms of obsolete GO terms are not included.  

     Mappings were based on data provided by:

     Gene Ontology:\<URL:
     http://gopher5/compbio/annotationSourceData/archive.godatabase.org/latest/>.
     Built: 08-Feb-2007

     Package built: Fri Mar  2 13:37:12 2007

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene>

_E_x_a_m_p_l_e_s:

         require("GO") || stop("GO unavailable")
         require("annotate") || stop("annotate unavailable")
         # Convert the environment object to a list
         xx <- as.list(GOSYNONYM)
         if(length(xx) > 0){
             # Get the TERMS for the first elent of xx
             GOID(xx[[1]])
             Term(xx[[1]])
             Synonym(xx[[1]])
             Secondary(xx[[1]])
             Definition(xx[[1]])
             Ontology(xx[[1]])
         }

