getAllInt              package:yaqcaffy              R Documentation

_G_e_t _t_h_e _G_C_O_S _v_a_l_u_e_s _f_o_r _a _g_i_v_e_n _s_p_i_k_e _p_r_o_b_e

_D_e_s_c_r_i_p_t_i_o_n:

     This function retrieves the expression intensities prvided by the
     object of class '"YAQCStats"' for the probe which names are
     compatible with the  given pattern and return their mean value.

_U_s_a_g_e:

       getAllInt(YAQCStatsObject,pattern)

_A_r_g_u_m_e_n_t_s:

YAQCStatsObject: an object of type '"YAQCStats"' 

 pattern: a pattern used to select the probe names to be used 

_V_a_l_u_e:

     An object of type '"numeric"' in which the mean expression
     intensities  of each array are given.

_A_u_t_h_o_r(_s):

     Laurent Gatto

_E_x_a_m_p_l_e_s:

         ## load a dataset
         library(affydata)
         data(Dilution)
         ## perform quality control
         qc <- yaqc(Dilution)
         ## get intensities for the biob
         ## spikes probe sets
         getAllInt(qc,"biob")

