Entry: moreSpikeInProbes
Aliases: isLog avns moreSpikeInProbes gcosProbes bioCalls arrays plot
Keywords: misc
Description: Accessor Methods for YAQCStats class
URL: ../../../library/yaqcaffy/html/YAQCStats-accessor.html

Entry: YAQCStats-class
Aliases: YAQCStats-class isLog,YAQCStats-method target,YAQCStats-method avns,YAQCStats-method moreSpikeInProbes,YAQCStats-method gcosProbes,YAQCStats-method bioCalls,YAQCStats-method isLog-methods target-methods avns-methods moreSpikeInProbes-methods gcosProbes-methods bioCalls-methods arrays-methods plot,YAQCStats,ANY-method show,YAQCStats-method merge,YAQCStats-method arrays,YAQCStats-method
Keywords: classes
Description: Class "YAQCStats"
URL: ../../../library/yaqcaffy/html/YAQCStats-class.html

Entry: getAllInt
Aliases: getAllInt
Keywords: misc
Description: Get the GCOS values for a given spike probe
URL: ../../../library/yaqcaffy/html/getAllInt.html

Entry: getBioProbes
Aliases: getBioProbes
Keywords: misc
Description: Get the names of the Bio spike probes on the array
URL: ../../../library/yaqcaffy/html/getBioProbes.html

Entry: getOutliers
Aliases: getOutliers
Keywords: misc
Description: Get outliers for the different YAQCStatsObject slots
URL: ../../../library/yaqcaffy/html/getOutliers.html

Entry: getQCRatios
Aliases: getQCRatios
Keywords: misc
Description: Compute qc probe ratios using GCOS intensity values
URL: ../../../library/yaqcaffy/html/getQCRatios.html

Entry: getRatioProbes
Aliases: getRatioProbes
Keywords: misc
Description: Get the names of degradation control probes on the array
URL: ../../../library/yaqcaffy/html/getRatioProbes.html

Entry: getSpikeProbes
Aliases: getSpikeProbes
Keywords: misc
Description: Get the names of all spike probes on the array
URL: ../../../library/yaqcaffy/html/getSpikeProbes.html

Entry: morespikes
Aliases: morespikes
Keywords: datasets
Description: The name of more spike probes
URL: ../../../library/yaqcaffy/html/morespikes.html

Entry: reprodPlot
Aliases: reprodPlot
Keywords: misc
Description: Plot human whole genome GeneChips reproductibility
URL: ../../../library/yaqcaffy/html/reprodPlot.html

Entry: yaqc-methods
Aliases: yaqc-methods yaqc,eSet-method
Keywords: methods
Description: Create an YAQCStat object
URL: ../../../library/yaqcaffy/html/yaqc-methods.html

Entry: yaqc.affy
Aliases: yaqc.affy yaqc
Keywords: misc
Description: Generate QC stats from an AffyBatch object
URL: ../../../library/yaqcaffy/html/yaqc.affy.html

Entry: yaqc.plot
Aliases: yaqc.plot plot,YAQCStats plot,YAQCStats-method plot,YAQCStats,missing-method
Keywords: misc
Description: Plots a YAQCStats object
URL: ../../../library/yaqcaffy/html/yaqc.plot.html
