classicScore-class           package:topGO           R Documentation

_C_l_a_s_s "_c_l_a_s_s_i_c_S_c_o_r_e"

_D_e_s_c_r_i_p_t_i_o_n:

     TODO: A class that extends the virtual class groupStats by adding 
     a slot representing the score of each gene. (used for KS test)

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("classicScore",
     testStatistic, name, allMembers, groupMembers, score,
     decreasing)'. ~~ describe objects here ~~

_S_l_o_t_s:


     '_s_c_o_r_e': Object of class '"numeric"' ~~ 

     '_n_a_m_e': Object of class '"character"' ~~ 

     '_a_l_l_M_e_m_b_e_r_s': Object of class '"character"' ~~ 

     '_m_e_m_b_e_r_s': Object of class '"character"' ~~ 

     '_t_e_s_t_S_t_a_t_i_s_t_i_c': Object of class '"function"' ~~ 

_E_x_t_e_n_d_s:

     Class '"groupStats"', directly.

_M_e_t_h_o_d_s:


     _a_l_l_S_c_o_r_e Method to obtain the score of all members.

     _s_c_o_r_e_O_r_d_e_r Returns TRUE if the score should be ordered increasing,
          FALSE otherwise.

     _m_e_m_b_e_r_s_S_c_o_r_e 'signature(object = "classicScore")': ... 

     _r_a_n_k_M_e_m_b_e_r_s 'signature(object = "classicScore")': ... 

     _s_c_o_r_e<- 'signature(object = "classicScore")': ... 

_A_u_t_h_o_r(_s):

     Adrian Alexa

_S_e_e _A_l_s_o:

     'classicCount-class', 'groupStats-class', 'getSigGroups-methods'

_E_x_a_m_p_l_e_s:

     ## define the type of test you want to use
     test.stat <- new("classicScore", testStatistic = GOKSTest, name = "KS tests")

