Entry: MmDEGenes
Aliases: MmDEGenes
Keywords: datasets
Description: Known DE genes for Mouse quality hybridizations.
URL: ../../../library/arrayQuality/html/MmDEGenes.html

Entry: PRv9mers
Aliases: PRv9mers
Keywords: hplot
Description: Print Run Quality version 9mers
URL: ../../../library/arrayQuality/html/PRv9mers.html

Entry: PRvQCHyb
Aliases: PRvQCHyb
Keywords: hplot
Description: Print run Quality version Quality Control Hybridization
URL: ../../../library/arrayQuality/html/PRvQCHyb.html

Entry: agQuality
Aliases: agQuality agcontrolCode
Keywords: hplot
Description: Diagnostic plots and comparative boxplots for general hybridization, Agilent format
URL: ../../../library/arrayQuality/html/agQuality.html

Entry: Internal functions
Aliases: arrayScal quality2HTML EMSplit qpS2N qpPTLoess qpImage qpHexbin gpFlagWt qpDotPlots qpMAPlots setCtlCol arrayControls replicatesAvariance arrayReplicates outputNormData qpS2Nmeebo qpDotPlotsMeebo qpDotPlotsMeebo2 qpBoxplotMeebo controlCodeMeebo qpMisMatchPlot BEbin.linear qpBEplot.linear qpTiling getSpikeIds getSpikeIndex readAllSpikes Spike.MMplot Spike.Sensitivity Spike.Individual.Sensitivity Spike.MM.Scatter Spike.Cy5vsCy3 MeeboSpotTypes qpDotPlotsEEBO qpS2Neebo controlCodeHeebo HeeboSpotTypes
Keywords: methods
Description: Internal arrayQuality functions
URL: ../../../library/arrayQuality/html/arrayQuality-internal.html

Entry: globalQuality
Aliases: globalQuality
Keywords: programming
Description: Quality measures for general hybridization.
URL: ../../../library/arrayQuality/html/globalQuality.html

Entry: gpQuality
Aliases: gpQuality
Keywords: hplot
Description: Diagnostic plots and comparative boxplots for general hybridization
URL: ../../../library/arrayQuality/html/gpQuality.html

Entry: gprDB
Aliases: MmReferenceDB index.html HsReferenceDB
Keywords: datasets
Description: Reference slides for Mouse oligos hybridizations
URL: ../../../library/arrayQuality/html/gprDB.html

Entry: heeboQuality
Aliases: heeboQuality
Keywords: dynamic
Description: Diagnostics plots designed for HEEBO set controls
URL: ../../../library/arrayQuality/html/heeboQuality.html

Entry: heeboQualityPlots
Aliases: heeboQualityPlots
Keywords: hplot
Description: Qualitative diagnostic plot for general hybridization, specific to HEEBO set.
URL: ../../../library/arrayQuality/html/heeboQualityPlots.html

Entry: maQualityPlots
Aliases: maQualityPlots
Keywords: hplot
Description: Qualitative diagnostic plot for general hybridization
URL: ../../../library/arrayQuality/html/maQualityPlots.html

Entry: meeboQuality
Aliases: meeboQuality
Keywords: dynamic
Description: Diagnostics plots designed for MEEBO set controls
URL: ../../../library/arrayQuality/html/meeboQuality.html

Entry: meeboQualityPlots
Aliases: meeboQualityPlots
Keywords: hplot
Description: Qualitative diagnostic plot for general hybridization, specific to MEEBO set.
URL: ../../../library/arrayQuality/html/meeboQualityPlots.html

Entry: prdata
Aliases: 9Mm137.gpr 12Mm250.gpr
Keywords: datasets
Description: Example GPR files
URL: ../../../library/arrayQuality/html/prdata.html

Entry: qcScore
Aliases: qcScore
Keywords: programming
Description: Quality Control score for general hybridization
URL: ../../../library/arrayQuality/html/qcScore.html

Entry: qualBoxplot
Aliases: qualBoxplot
Keywords: hplot
Description: Comparative boxplot for general hybridization Quality Control
URL: ../../../library/arrayQuality/html/qualBoxplot.html

Entry: qualityScore
Aliases: qualityScore
Keywords: programming
Description: Quality Control score for general hybridization
URL: ../../../library/arrayQuality/html/qualityScore.html

Entry: readAgilent
Aliases: readAgilent
Keywords: programming
Description: Extraction of measures from Agilent (.txt) files.
URL: ../../../library/arrayQuality/html/readAgilent.html

Entry: readGPR
Aliases: readGPR
Keywords: programming
Description: Reading GenePix gpr file
URL: ../../../library/arrayQuality/html/readGPR.html

Entry: readSpikeTypes
Aliases: readSpikeTypes
Keywords: data
Description: Read Spike Types File
URL: ../../../library/arrayQuality/html/readSpikeTypes.html

Entry: readSpot
Aliases: readSpot
Keywords: programming
Description: Extraction of measures from Spot (.spot) files.
URL: ../../../library/arrayQuality/html/readSpot.html

Entry: readcontrolCode
Aliases: readcontrolCode
Keywords: hplot
Description: Control status information
URL: ../../../library/arrayQuality/html/readcontrolCode.html

Entry: scaleRefTable
Aliases: scaleRefTable
Keywords: programming
Description: General hybridization quality scaling
URL: ../../../library/arrayQuality/html/scaleRefTable.html

Entry: slideQuality
Aliases: slideQuality
Keywords: programming
Description: Quality Control statistics for general hybridization
URL: ../../../library/arrayQuality/html/slideQuality.html

Entry: spotQuality
Aliases: spotQuality
Keywords: hplot
Description: Diagnostic plots and comparative boxplots for general hybridization, Spot format
URL: ../../../library/arrayQuality/html/spotQuality.html
