TranscriptRegion-class     package:GenomeGraphs     R Documentation

_C_l_a_s_s "_T_r_a_n_s_c_r_i_p_t_R_e_g_i_o_n", _r_e_p_r_e_s_e_n_t_i_n_g  _a _g_e_n_o_m_i_c _r_e_g_i_o_n _w_i_t_h _t_r_a_n_s_c_r_i_p_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Upon creation of this object, transcripts present in a specified
     region will be retrieved from Ensembl

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form
     'new("TranscriptRegion", ...)'

_S_l_o_t_s:


     '_s_t_a_r_t': Object of class '"numeric"', the start base of the
          genomic region

     '_e_n_d': Object of class '"numeric"', the end base of the genomic
          region 

     '_c_h_r_o_m_o_s_o_m_e': Object of class '"character"', the chromosome

     '_s_i_z_e': Object of class '"numeric"', the size of the plot for this
          object

     '_b_i_o_m_a_r_t': Object of class '"Mart"', contains link to Ensembl and
          should be created using the useMart function of the biomaRt
          package 

     '_e_n_s': Object of class '"data.frame"', users should not specify
          this, it contains the output of the query to Ensembl 

_M_e_t_h_o_d_s:


     _s_h_o_w 'signature(object = "TranscriptRegion")': ... 

_A_u_t_h_o_r(_s):

     Steffen Durinck

_R_e_f_e_r_e_n_c_e_s:

     http://www.stat.berkeley.edu/~steffen/

_S_e_e _A_l_s_o:

     objects to See Also as 'gdPlot'

_E_x_a_m_p_l_e_s:

     showClass("TranscriptRegion")

