Image processing and image analysis toolkit for R

Documentation for package ‘EBImage’ version 2.4.0

User Guides and Package Vignettes

Read overview or browse directory.

Help Pages

A B C D E F G H I M N O P R S T U W Z misc

-- --

EBImage-package

Package overview

-- A --

affinet	Image transformation: rotation, resize, etc.
affinet,Image-method	Image transformation: rotation, resize, etc.
animate	Interactive image display
animate,array-method	Interactive image display
animate,Image-method	Interactive image display
animate,IndexedImage-method	Interactive image display
Arith	Generic methods for objects of class Image
as.Image	Generic methods for objects of class Image
as.Image,array-method	Generic methods for objects of class Image
as.Image,IndexedImage-method	Defintion of class 'IndexedImage'
assert	Image creation, copying and assertion
assert,Image,Image-method	Image creation, copying and assertion
assert,Image,missing-method	Image creation, copying and assertion
athresh	Image and color channel thresholding
athresh,Image-method	Image and color channel thresholding

-- B --

blur	Noise removal, blurring and smoothing or images
blur,Image-method	Noise removal, blurring and smoothing or images

-- C --

cgamma	Enhancing images and colors
cgamma,Image-method	Enhancing images and colors
channel	Color and image color mode conversions
channel,ANY,character-method	Color and image color mode conversions
channel,Image,character-method	Color and image color mode conversions
channelMix	Color and image color mode conversions
choose.image	EBImage deprecated functions
chooseImage	Image I/O
closing	Morphological operations on images
closing,Image-method	Morphological operations on images
cmoments	Image moments and moment invariants, feature extraction
cmoments,IndexedImage,Image-method	Image moments and moment invariants, feature extraction
cmoments,IndexedImage,missing-method	Image moments and moment invariants, feature extraction
colorMode	Defintion of class 'Image', its accessor methods
combine	Image creation, copying and assertion
combine,Image,Image-method	Image creation, copying and assertion
combine,list,missing-method	Image creation, copying and assertion
compression	Defintion of class 'Image', its accessor methods
contrast	Enhancing images and colors
contrast,Image-method	Enhancing images and colors
copy	Image creation, copying and assertion
copy,Image-method	Image creation, copying and assertion
cthresh	Image and color channel thresholding
cthresh,Image-method	Image and color channel thresholding

-- D --

denoise	Noise removal, blurring and smoothing or images
denoise,Image-method	Noise removal, blurring and smoothing or images
despeckle	Noise removal, blurring and smoothing or images
despeckle,Image-method	Noise removal, blurring and smoothing or images
dilate	Morphological operations on images
dilate,Image-method	Morphological operations on images
display	Interactive image display
distmap	Distance map transform of binary images
distmap,Image-method	Distance map transform of binary images
drawfont	Drawing primitives on images
drawtext	Drawing primitives on images
drawtext,Image,list,list-method	Drawing primitives on images
drawtext,Image,matrix,character-method	Drawing primitives on images
drawtext,Image,numeric,character-method	Drawing primitives on images

-- E --

EBImage	Package overview
EBImage-deprecated	EBImage deprecated functions
edge	Segmentation and edge detection
edge,Image-method	Segmentation and edge detection
edge.features	EBImage deprecated functions
edge.features,IndexedImage-method	EBImage deprecated functions
edge.profile	EBImage deprecated functions
edge.profile,IndexedImage-method	EBImage deprecated functions
edgeFeatures	Extraction of edge profiles and edge features from images of indexed objects
edgeFeatures,IndexedImage-method	Extraction of edge profiles and edge features from images of indexed objects
edgeProfile	Extraction of edge profiles and edge features from images of indexed objects
edgeProfile,IndexedImage-method	Extraction of edge profiles and edge features from images of indexed objects
enhance	Enhancing images and colors
enhance,Image-method	Enhancing images and colors
equalize	Enhancing images and colors
equalize,Image-method	Enhancing images and colors
erode	Morphological operations on images
erode,Image-method	Morphological operations on images

-- F --

features	Feature extraction for objects in indexed images
features,IndexedImage-method	Feature extraction for objects in indexed images
fileName	Defintion of class 'Image', its accessor methods
fillHull	Filling matrix data with flood fill algorithm
fillHull,IndexedImage-method	Filling matrix data with flood fill algorithm
filter2	2D Convolution Filter
filter2,array,matrix-method	2D Convolution Filter
filter2,array,missing-method	2D Convolution Filter
filter2,Image,matrix-method	2D Convolution Filter
filter2,Image,missing-method	2D Convolution Filter
flip	Image transformation: rotation, resize, etc.
flip,Image-method	Image transformation: rotation, resize, etc.
floodFill	Filling matrix data with flood fill algorithm
floodFill,array-method	Filling matrix data with flood fill algorithm
flop	Image transformation: rotation, resize, etc.
flop,Image-method	Image transformation: rotation, resize, etc.
frameDist	Calculate pairwise distances between image frames or frames of two images
frameDist,Image,Image-method	Calculate pairwise distances between image frames or frames of two images
frameDist,Image,missing-method	Calculate pairwise distances between image frames or frames of two images

-- G --

gblur	Noise removal, blurring and smoothing or images
gblur,Image-method	Noise removal, blurring and smoothing or images
getFeatures	Feature extraction for objects in indexed images
getFeatures,IndexedImage-method	Feature extraction for objects in indexed images
Grayscale	Defintion of class 'Image', its accessor methods

-- H --

haralick.features	EBImage deprecated functions
haralick.features,IndexedImage,Image-method	EBImage deprecated functions
haralick.matrix	EBImage deprecated functions
haralick.matrix,IndexedImage,Image-method	EBImage deprecated functions
haralickFeatures	Co-occurrence matrices (GLCM) and Haralick texture features
haralickFeatures,IndexedImage,Image-method	Co-occurrence matrices (GLCM) and Haralick texture features
haralickMatrix	Co-occurrence matrices (GLCM) and Haralick texture features
haralickMatrix,IndexedImage,Image-method	Co-occurrence matrices (GLCM) and Haralick texture features
header	Image creation, copying and assertion
header,Image-method	Image creation, copying and assertion
hist,Image-method	Generic methods for objects of class Image
hull.features	EBImage deprecated functions
hull.features,IndexedImage-method	EBImage deprecated functions
hullFeatures	Extraction of hull features from images of indexed objects
hullFeatures,IndexedImage-method	Extraction of hull features from images of indexed objects

-- I --

Image	Image creation, copying and assertion
image,Image-method	Generic methods for objects of class Image
Image-class	Defintion of class 'Image', its accessor methods
imageData	Defintion of class 'Image', its accessor methods
IndexedImage-class	Defintion of class 'IndexedImage'
is.Image	Image creation, copying and assertion

-- M --

matchObjects	Matching objects in two indexed images
matchObjects,IndexedImage,IndexedImage-method	Matching objects in two indexed images
median.Image	Generic methods for objects of class Image
mediansmooth	Noise removal, blurring and smoothing or images
mediansmooth,Image-method	Noise removal, blurring and smoothing or images
mkball	2D Convolution Filter
mkbox	2D Convolution Filter
modulate	Enhancing images and colors
modulate,Image-method	Enhancing images and colors
moments	Image moments and moment invariants, feature extraction
moments,Image,missing-method	Image moments and moment invariants, feature extraction
moments,IndexedImage,Image-method	Image moments and moment invariants, feature extraction
moments,IndexedImage,missing-method	Image moments and moment invariants, feature extraction
morphKern	Morphological operations on images

-- N --

negate	Functions to normalize images
negate,Image-method	Functions to normalize images
noise	Noise removal, blurring and smoothing or images
noise,Image-method	Noise removal, blurring and smoothing or images
normalize	Functions to normalize images
normalize,Image-method	Functions to normalize images
normalize2	Functions to normalize images
normalize2,Image-method	Functions to normalize images

-- O --

opening	Morphological operations on images
opening,Image-method	Morphological operations on images

-- P --

paintObjects	Marking detected objects in reference images
paintObjects,IndexedImage,Image-method	Marking detected objects in reference images
print.Image	Generic methods for objects of class Image
print.IndexedImage	Generic methods for objects of class Image
propagate	Voronoi-based segmentation on image manifolds
propagate,Image,IndexedImage-method	Voronoi-based segmentation on image manifolds

-- R --

read.image	EBImage deprecated functions
readImage	Image I/O
reenumerate	Object removal
reenumerate,IndexedImage-method	Object removal
resample	Image transformation: rotation, resize, etc.
resample,Image-method	Image transformation: rotation, resize, etc.
resize	Image transformation: rotation, resize, etc.
resize,Image-method	Image transformation: rotation, resize, etc.
resolution	Defintion of class 'Image', its accessor methods
rgbImage	Color and image color mode conversions
rmObjects	Object removal
rmObjects,IndexedImage,list-method	Object removal
rmObjects,IndexedImage,numeric-method	Object removal
rmoments	Image moments and moment invariants, feature extraction
rmoments,IndexedImage,Image-method	Image moments and moment invariants, feature extraction
rmoments,IndexedImage,missing-method	Image moments and moment invariants, feature extraction
rotate	Image transformation: rotation, resize, etc.
rotate,Image-method	Image transformation: rotation, resize, etc.

-- S --

segment	Segmentation and edge detection
segment,Image-method	Segmentation and edge detection
sharpen	Noise removal, blurring and smoothing or images
sharpen,Image-method	Noise removal, blurring and smoothing or images
sharpen2	2D Convolution Filter
sharpen2,Image-method	2D Convolution Filter
show,Image-method	Generic methods for objects of class Image
smoments	Image moments and moment invariants, feature extraction
smoments,IndexedImage,Image-method	Image moments and moment invariants, feature extraction
smoments,IndexedImage,missing-method	Image moments and moment invariants, feature extraction
stackObjects	Generate a stack of images for detected objects, one object per image
stackObjects,IndexedImage,Image,character-method	Generate a stack of images for detected objects, one object per image
stackObjects,IndexedImage,Image,list-method	Generate a stack of images for detected objects, one object per image
stackObjects,IndexedImage,Image,missing-method	Generate a stack of images for detected objects, one object per image
stackObjects,IndexedImage,Image,numeric-method	Generate a stack of images for detected objects, one object per image
stopIfNotImage	Image creation, copying and assertion

-- T --

thresh	Image and color channel thresholding
thresh,Image-method	Image and color channel thresholding
tile	Generate a tiled image from a stack of images
tile,Image-method	Generate a tiled image from a stack of images
tile,list-method	Generate a tiled image from a stack of images
TrueColor	Defintion of class 'Image', its accessor methods

-- U --

umask	Noise removal, blurring and smoothing or images
umask,Image-method	Noise removal, blurring and smoothing or images
untile	Generate a tiled image from a stack of images
untile,Image,numeric-method	Generate a tiled image from a stack of images

-- W --

watershed	Watershed transformation and watershed based object detection
watershed,Image-method	Watershed transformation and watershed based object detection
write.image	EBImage deprecated functions
write.image,Image-method	EBImage deprecated functions
writeImage	Image I/O
writeImage,Image-method	Image I/O

-- Z --

zernike.moments	EBImage deprecated functions
zernike.moments,IndexedImage,Image-method	EBImage deprecated functions
zernikeMoments	Extraction of Zernike moments from images of indexed objects
zernikeMoments,IndexedImage,Image-method	Extraction of Zernike moments from images of indexed objects

-- misc --

[,Image-method

Generic methods for objects of class Image