Package: Biostrings
Title: String objects representing biological sequences, and matching
        algorithms
Description: Memory efficient string containers, string matching
        algorithms, and other utilities, for fast manipulation of large
        biological sequences or set of sequences.
Version: 2.8.18
Author: H. Pages, R. Gentleman, P. Aboyoun and S. DebRoy
Maintainer: H. Pages <hpages@fhcrc.org>
biocViews: SequenceMatching, Genetics, Infrastructure
Depends: R (>= 2.7.0), methods, stats
Imports: methods, stats
Suggests: BSgenome (>= 1.7.7), BSgenome.Celegans.UCSC.ce2 (>= 1.3.4),
        BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.7), drosophila2probe,
        hgu95av2probe, RUnit
License: Artistic-2.0
LazyLoad: yes
Collate: 00datacache.R utils.R IRanges-class.R IRanges-utils.R
        MaskCollection-class.R read.Mask.R SparseList-class.R
        readFASTA.R IUPAC_CODE_MAP.R AMINO_ACID_CODE.R GENETIC_CODE.R
        XStringCodec-class.R XRaw.R XInteger.R XString-class.R
        XStringViews-class.R XStringViews-constructors.R
        XStringSet-class.R XStringList-class.R MaskedXString-class.R
        XStringPartialMatches-class.R XStringAlign-class.R
        XStringSet-io.R letter.R subXString.R alphabetFrequency.R
        chartr.R reverse.R toComplex.R replaceLetterAtLoc.R maskMotif.R
        injectHardMask.R match-utils.R matchPattern.R
        matchPattern.BOC.R matchPattern.BOC2.R matchLRPatterns.R
        matchProbePair.R matchPWM.R findPalindromes.R PDict-class.R
        matchPDict.R align-utils.R pmatchPattern.R needwunsQS.R
        pairwiseAlignment.R debug.R test.R zzz.R
Packaged: Sat Aug 9 03:16:20 2008; biocbuild
Built: R 2.7.1; i386-pc-mingw32; 2008-08-09 07:59:12; windows
