injectSNPs             package:BSgenome             R Documentation

_i_n_j_e_c_t_S_N_P_s

_D_e_s_c_r_i_p_t_i_o_n:

     Inject SNPs from a package of SNP locations into a genome.

_U_s_a_g_e:

       injectSNPs(bsgenome, SNPlocs_pkgname)
       available.SNPs()

_A_r_g_u_m_e_n_t_s:

bsgenome: [TODO] 

SNPlocs_pkgname: [TODO] 

_D_e_t_a_i_l_s:

     [TODO]

_V_a_l_u_e:

     [TODO]

_A_u_t_h_o_r(_s):

     H. Pages

_S_e_e _A_l_s_o:

     BSgenome-class

_E_x_a_m_p_l_e_s:

       ## Look at the SNP locations packages currently available:
       available.SNPs()

       if (interactive()) {
         ## Make your choice and install with:
         source("http://bioconductor.org/biocLite.R")
         biocLite("SNPlocs.Hsapiens.dbSNP.20071016")

         ## Inject into the Human genome:
         library(BSgenome.Hsapiens.UCSC.hg18)
         Hsapiens
         HsWithSNPs <- injectSNPs(Hsapiens, "SNPlocs.Hsapiens.dbSNP.20071016")
         HsWithSNPs
         alphabetFrequency(Hsapiens$chr1)
         alphabetFrequency(HsWithSNPs$chr1)
       }

