Arora2010               Raw and processed data for the application of
                        PANs to Ewing's sarcoma
Arora2010.BMfitting     Fitting a beta-mixture model to association
                        scores
Arora2010.InferPAN      Infer a posterior association network given a
                        fitted BetaMixture object
Arora2010.ModuleSearchByPvclust
                        Searching for enriched functional modules by
                        pvclust
Arora2010.fig           A pipeline function to reproduce the main
                        figures of network analyses in Wang et al 2012
                        for Arora S et al 2010
Arora2010.hypergeo      Hypergeometric tests for pathway analysis
Arora2010.module.visualize
                        Infer a posterior association network given a
                        fitted BetaMixture object
Arora2010.pipeline      A pipeline to do network analyses in Wang et al
                        2012 for Arora S et al 2010
GSEARandomWalkFig       Plot a figure illustrating enrichment analysis
                        results
Mulder2012              Raw and processed data for the application to
                        epidermal stem cells
Mulder2012.BMfitting    Fitting a beta-mixture model to association
                        scores
Mulder2012.InferPAN     Infer a posterior association network given a
                        fitted BetaMixture object
Mulder2012.ModuleSearchByPvclust
                        Searching for enriched functional modules by
                        pvclust
Mulder2012.PPIPre       Extracting protein-protein interactions from
                        PINdb
Mulder2012.PPIenrich    Enrichment analyses of posterior probabilities
                        in protein-protein interactions
Mulder2012.RNAiPre      Preprocessing of the raw RNAi screens
Mulder2012.fig          A pipeline function to reproduce the main
                        figures of network analyses in Mulder K et al
                        2012 and Wang et al 2012
Mulder2012.module.visualize
                        Infer a posterior association network given a
                        fitted BetaMixture object
Mulder2012.pipeline     A pipeline to do network analyses for Mulder
                        2012
dist.pvclust4PAN        Compute distances between gene phenotypes for
                        pvclust
parPvclust4PAN          Compute distances between gene phenotypes for
                        pvclust
