SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ)

[Up] [Top]

Documentation for package ‘SHDZ.db’ version 2.14.0

Help Pages

SHDZ Bioconductor annotation data package
SHDZ.db Bioconductor annotation data package
SHDZACCNUM Map Manufacturer identifiers to Accession Numbers
SHDZALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
SHDZCHR Map Manufacturer IDs to Chromosomes
SHDZCHRLENGTHS A named vector for the length of each of the chromosomes
SHDZCHRLOC Map Manufacturer IDs to Chromosomal Location
SHDZCHRLOCEND Map Manufacturer IDs to Chromosomal Location
SHDZENSEMBL Map Ensembl gene accession numbers with Entrez Gene identifiers
SHDZENSEMBL2PROBE Map Ensembl gene accession numbers with Entrez Gene identifiers
SHDZENTREZID Map between Manufacturer Identifiers and Entrez Gene
SHDZENZYME Maps between Manufacturer IDs and Enzyme Commission (EC) Numbers
SHDZENZYME2PROBE Maps between Manufacturer IDs and Enzyme Commission (EC) Numbers
SHDZGENENAME Map between Manufacturer IDs and Genes
SHDZGO Maps between manufacturer IDs and Gene Ontology (GO) IDs
SHDZGO2ALLPROBES Maps between manufacturer IDs and Gene Ontology (GO) IDs
SHDZGO2PROBE Maps between manufacturer IDs and Gene Ontology (GO) IDs
SHDZLOCUSID Map between Manufacturer Identifiers and Entrez Gene
SHDZMAP Map between Manufacturer Identifiers and cytogenetic maps/bands
SHDZMAPCOUNTS Number of mapped keys for the maps in package SHDZ.db
SHDZOMIM Map between Manufacturer Identifiers and Mendelian Inheritance in Man (MIM) identifiers
SHDZORGANISM The Organism information for SHDZ
SHDZORGPKG The Organism information for SHDZ
SHDZPATH Mappings between probe identifiers and KEGG pathway identifiers
SHDZPATH2PROBE Mappings between probe identifiers and KEGG pathway identifiers
SHDZPFAM Map Manufacturer IDs to Pfam IDs
SHDZPMID Maps between Manufacturer Identifiers and PubMed Identifiers
SHDZPMID2PROBE Maps between Manufacturer Identifiers and PubMed Identifiers
SHDZPROSITE Map Manufacturer IDs to PROSITE ID
SHDZREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
SHDZSYMBOL Map between Manufacturer Identifiers and Gene Symbols
SHDZUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
SHDZUNIPROT Map Uniprot accession numbers with Entrez Gene identifiers
SHDZUNIPROT2PROBE Map Uniprot accession numbers with Entrez Gene identifiers
SHDZ_dbconn Collect information about the package annotation DB
SHDZ_dbfile Collect information about the package annotation DB
SHDZ_dbInfo Collect information about the package annotation DB
SHDZ_dbschema Collect information about the package annotation DB