import(AnnotationDbi)
import(VariantFiltering)

importMethodsFrom(RSQLite, dbConnect,
                           dbDisconnect)
importMethodsFrom(VariantAnnotation, readVcf,
                                     scanVcfHeader,
                                     ScanVcfParam,
                                     info)
importMethodsFrom(Rsamtools, headerTabix)
importMethodsFrom(IRanges, elementLengths,
                           start,
                           width,
                           nchar,
                           unlist)
importMethodsFrom(GenomicRanges, seqnames,
                                 rowData)
importMethodsFrom(Biostrings, unlist)

importFrom(Biobase, createPackage)
importFrom(RSQLite, SQLite)
importFrom(Rsamtools, TabixFile)

export(makeMafDbPackageKG,
       MafDbKGdefaultURL,
       MafDbKGdefaultPkgName)

## the MafDb object is exported dynamically at load time (see R/zzz.R)
