RoarDataset             Creates a 'RoarDataset' object
RoarDataset-class       Class '"RoarDataset"'
RoarDatasetFromFiles    Creates a 'RoarDataset' object
checkStep               Private/inner/helper method to check the order
                        of the invoked analysis methods
computePvals            Computes pvalues (Fisher test) for this
                        'RoarDataset' object
computeRoars            Computes m/M and roar values for this
                        'RoarDataset' object
cores                   Method to check how many cores are used by a
                        roar analysis - right now not useful
countPrePost            Counts reads falling over PRE/POST portions of
                        the given transcripts
countResults            Returns a dataframe with results of the
                        analysis for a 'RoarDataset' object
fpkmResults             Returns a dataframe with results of the
                        analysis for a 'RoarDataset' object
getFisher               Private/inner/helper method to perform Fisher
                        test
meanAcrossAssays        Private/inner/helper method to get average
                        counts across samples
pvalueFilter            Returns a dataframe with results of the
                        analysis for a 'RoarDataset' object
roar-package            Identify differential APA usage from RNA-seq
                        alignments
standardFilter          Returns a dataframe with results of the
                        analysis for a 'RoarDataset' object
totalResults            Returns a dataframe with results of the
                        analysis for a 'RoarDataset' object
