align	align-class
align-class	align-class
consensus	gadem-class
consensus,gadem-method	gadem-class
dim,gadem-method	gadem-class
endPos	gadem-class
endPos,gadem-method	gadem-class
GADEM	GADEM
gadem	gadem-class
gadem-class	gadem-class
getPWM	gadem-class
getPWM,gadem-method	gadem-class
getPWM,motif-method	gadem-class
length,gadem-method	gadem-class
motif	motif-class
motif-class	motif-class
names,gadem-method	gadem-class
names<-,gadem-method	gadem-class
nMotifs	motif-class
nMotifs,gadem-method	gadem-class
nOccurrences	gadem-class
nOccurrences,gadem-method	gadem-class
parameters	parameters-class
parameters,gadem-method	gadem-class
parameters-class	parameters-class
plot,gadem,ANY-method	gadem-class
plot,gadem-method	gadem-class
plot,motif,ANY-method	gadem-class
readPWMfile	readPWMfile
startPos	gadem-class
startPos,gadem-method	gadem-class
summary,list-method	gadem-class
[,gadem,ANY,ANY-method	gadem-class
[,gadem-method	gadem-class
[[,gadem,ANY,ANY-method	gadem-class
[[,gadem-method	gadem-class
