Package: oligo
Version: 1.28.3
Title: Preprocessing tools for oligonucleotide arrays.
Author: Benilton Carvalho and Rafael Irizarry. Contributors: Ben
        Bolstad, Vincent Carey, Wolfgang Huber, Harris Jaffee, Jim
        MacDonald, Matt Settles
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
Depends: R (>= 2.15.0), BiocGenerics (>= 0.3.2), oligoClasses (>=
        1.24.0), Biobase (>= 2.17.8), Biostrings (>= 2.25.12)
Imports: affyio (>= 1.25.0), affxparser (>= 1.29.11), BiocGenerics (>=
        0.3.2), DBI (>= 0.2-5), ff, graphics, methods, preprocessCore
        (>= 1.19.0), splines, stats, stats4, utils, zlibbioc
Enhances: ff, doMC, doMPI
LinkingTo: preprocessCore
Suggests: hapmap100kxba, pd.mapping50k.xba240, pd.huex.1.0.st.v2,
        pd.hg18.60mer.expr, pd.hugene.1.0.st.v1, maqcExpression4plex,
        genefilter, limma, RColorBrewer, oligoData, RUnit
Description: A package to analyze oligonucleotide arrays
        (expression/SNP/tiling/exon) at probe-level. It currently
        supports Affymetrix (CEL files) and NimbleGen arrays (XYS
        files).
License: LGPL (>= 2)
Collate: AllGenerics.R methods-GeneFeatureSet.R
        methods-ExonFeatureSet.R methods-ExpressionFeatureSet.R
        methods-ExpressionSet.R methods-LDS.R methods-FeatureSet.R
        methods-SnpFeatureSet.R methods-SnpCnvFeatureSet.R
        methods-TilingFeatureSet.R methods-HtaFeatureSet.R
        methods-DBPDInfo.R methods-background.R methods-normalization.R
        methods-summarization.R read.celfiles.R read.xysfiles.R
        utils-general.R utils-selectors.R todo-snp.R functions-crlmm.R
        functions-snprma.R justSNPRMA.R justCRLMM.R methods-snp6.R
        methods-genotype.R methods-PLMset.R zzz.R
LazyLoad: Yes
biocViews: Microarray, OneChannel, TwoChannel, Preprocessing, SNP,
        DifferentialExpression, ExonArray, GeneExpression, DataImport
Packaged: 2014-09-24 02:14:00 UTC; biocbuild
Built: R 3.1.1; i386-w64-mingw32; 2014-09-24 09:57:32 UTC; windows
Archs: i386, x64
